Results 41 - 60 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23679 | 5' | -53.8 | NC_005261.1 | + | 5107 | 0.71 | 0.795833 |
Target: 5'- cACAGCUCCGccagcuCGGCGcGGGCGGCc- -3' miRNA: 3'- uUGUUGAGGCu-----GCUGCuCCUGCUGcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 135059 | 0.7 | 0.804897 |
Target: 5'- cGGCAGCggcccgccgcuuUCCGGCGGCGGGcucgcggcccGGCGGCGGa -3' miRNA: 3'- -UUGUUG------------AGGCUGCUGCUC----------CUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 31440 | 0.7 | 0.813801 |
Target: 5'- uGGCGGCgCCGccCGGCGAGGACGAgCGc -3' miRNA: 3'- -UUGUUGaGGCu-GCUGCUCCUGCU-GCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 5512 | 0.7 | 0.831092 |
Target: 5'- cGCGGCagCGGCGGCGAGGcCGcCGGc -3' miRNA: 3'- uUGUUGagGCUGCUGCUCCuGCuGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 76554 | 0.7 | 0.831092 |
Target: 5'- uACGGCaUgGGCGACGAGGGCGAg-- -3' miRNA: 3'- uUGUUGaGgCUGCUGCUCCUGCUgcu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 42172 | 0.7 | 0.839463 |
Target: 5'- aAGCGAg-CCGugGACGcAGGGCG-CGAg -3' miRNA: 3'- -UUGUUgaGGCugCUGC-UCCUGCuGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 76448 | 0.7 | 0.839463 |
Target: 5'- gGACGcGC-CCGACGGCGAcGGCGGCGc -3' miRNA: 3'- -UUGU-UGaGGCUGCUGCUcCUGCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 40665 | 0.7 | 0.839463 |
Target: 5'- cAGCAGCUCCG-CGACGccgucgGGGAgcCGGCGc -3' miRNA: 3'- -UUGUUGAGGCuGCUGC------UCCU--GCUGCu -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 128872 | 0.69 | 0.847641 |
Target: 5'- ---cGCUgCCGACGACGAGG-CGGgGGc -3' miRNA: 3'- uuguUGA-GGCUGCUGCUCCuGCUgCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 76869 | 0.69 | 0.855618 |
Target: 5'- uGGC-GC-CCGGCGAgGAGGcCGACGGc -3' miRNA: 3'- -UUGuUGaGGCUGCUgCUCCuGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 34308 | 0.69 | 0.855618 |
Target: 5'- gAGCGAgaCCGACGGgGAGGcCGAgGGg -3' miRNA: 3'- -UUGUUgaGGCUGCUgCUCCuGCUgCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 43837 | 0.69 | 0.855618 |
Target: 5'- aAGCuGCUCggCGAgGGCGAGGACG-CGGc -3' miRNA: 3'- -UUGuUGAG--GCUgCUGCUCCUGCuGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 28654 | 0.69 | 0.863387 |
Target: 5'- uGACGAggCCGGCGGgGccGACGACGAc -3' miRNA: 3'- -UUGUUgaGGCUGCUgCucCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 136613 | 0.69 | 0.870943 |
Target: 5'- gAGCGGCgCgCGcGCGcCGAGGGCGGCGGg -3' miRNA: 3'- -UUGUUGaG-GC-UGCuGCUCCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 108863 | 0.69 | 0.870943 |
Target: 5'- aAGCGGCUCUGcaGCaGCGGguGGACGACGGc -3' miRNA: 3'- -UUGUUGAGGC--UGcUGCU--CCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 78414 | 0.69 | 0.870943 |
Target: 5'- ---uGCUCUGugGGCGAugggggGGGCGAUGGg -3' miRNA: 3'- uuguUGAGGCugCUGCU------CCUGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 88180 | 0.69 | 0.878279 |
Target: 5'- gGGCGACgCCGGCGGCGccGGCGagGCGGg -3' miRNA: 3'- -UUGUUGaGGCUGCUGCucCUGC--UGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 3848 | 0.68 | 0.88539 |
Target: 5'- cGGCAGCggcgCCGGCGccGCGcGGcCGGCGAg -3' miRNA: 3'- -UUGUUGa---GGCUGC--UGCuCCuGCUGCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 55996 | 0.68 | 0.89227 |
Target: 5'- cGGCAAC-CgCGGCGgggGCGGGGGCGGgGAa -3' miRNA: 3'- -UUGUUGaG-GCUGC---UGCUCCUGCUgCU- -5' |
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23679 | 5' | -53.8 | NC_005261.1 | + | 98048 | 0.68 | 0.89227 |
Target: 5'- uGGCGGCcgCgGGCGGCGGgaccgcGGGCGGCGGg -3' miRNA: 3'- -UUGUUGa-GgCUGCUGCU------CCUGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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