miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23679 5' -53.8 NC_005261.1 + 43180 0.66 0.952063
Target:  5'- uACGGCgccgCCGGCGAggcaGAGGugGuGCGGc -3'
miRNA:   3'- uUGUUGa---GGCUGCUg---CUCCugC-UGCU- -5'
23679 5' -53.8 NC_005261.1 + 43594 0.75 0.54407
Target:  5'- cGCGACgCCGucucCGGCGAGGAgGGCGAg -3'
miRNA:   3'- uUGUUGaGGCu---GCUGCUCCUgCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 43684 0.68 0.898917
Target:  5'- cAGCGGCUCC-ACGGCGAGGuccUGGCc- -3'
miRNA:   3'- -UUGUUGAGGcUGCUGCUCCu--GCUGcu -5'
23679 5' -53.8 NC_005261.1 + 43837 0.69 0.855618
Target:  5'- aAGCuGCUCggCGAgGGCGAGGACG-CGGc -3'
miRNA:   3'- -UUGuUGAG--GCUgCUGCUCCUGCuGCU- -5'
23679 5' -53.8 NC_005261.1 + 44014 0.66 0.963333
Target:  5'- -cCGGCUUCGGCG-CGGcGGGCGGCc- -3'
miRNA:   3'- uuGUUGAGGCUGCuGCU-CCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 44423 0.66 0.947841
Target:  5'- cGCGuACgCCGACGACGuGGAgCGGCu- -3'
miRNA:   3'- uUGU-UGaGGCUGCUGCuCCU-GCUGcu -5'
23679 5' -53.8 NC_005261.1 + 47525 0.66 0.95605
Target:  5'- -uCAGCUCgaacuCGACGGCGuucccGGGcGCGGCGAa -3'
miRNA:   3'- uuGUUGAG-----GCUGCUGC-----UCC-UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 47877 0.67 0.93373
Target:  5'- cGGCAGCgUCCGgggaGCGGCGGcGGCGGCGc -3'
miRNA:   3'- -UUGUUG-AGGC----UGCUGCUcCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 51986 0.78 0.393684
Target:  5'- cGCGGCgccgccgCCGACuuCGAGGACGACGAc -3'
miRNA:   3'- uUGUUGa------GGCUGcuGCUCCUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 52978 0.77 0.447074
Target:  5'- uGCGGCgCCGGCaGGCGGGGGCGGCGc -3'
miRNA:   3'- uUGUUGaGGCUG-CUGCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 53578 0.67 0.938677
Target:  5'- uAGCGGCcgcgggCCGGCGGCGccccagcGGAcCGACGAg -3'
miRNA:   3'- -UUGUUGa-----GGCUGCUGCu------CCU-GCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 55218 0.77 0.456359
Target:  5'- cGGCGGC-CCGagGCGGCGAGGGCGGCa- -3'
miRNA:   3'- -UUGUUGaGGC--UGCUGCUCCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 55996 0.68 0.89227
Target:  5'- cGGCAAC-CgCGGCGgggGCGGGGGCGGgGAa -3'
miRNA:   3'- -UUGUUGaG-GCUGC---UGCUCCUGCUgCU- -5'
23679 5' -53.8 NC_005261.1 + 56165 0.72 0.698392
Target:  5'- cAGCGGCggggCCcGCGGgGAGGACGACGc -3'
miRNA:   3'- -UUGUUGa---GGcUGCUgCUCCUGCUGCu -5'
23679 5' -53.8 NC_005261.1 + 56964 0.67 0.938677
Target:  5'- cGCGGCUCCGGCaGugguucggcaGCGAGcGCGugGAc -3'
miRNA:   3'- uUGUUGAGGCUG-C----------UGCUCcUGCugCU- -5'
23679 5' -53.8 NC_005261.1 + 59781 0.68 0.911495
Target:  5'- cGGCcGCagCGACGGCGGcGGGCGGCa- -3'
miRNA:   3'- -UUGuUGagGCUGCUGCU-CCUGCUGcu -5'
23679 5' -53.8 NC_005261.1 + 60043 0.66 0.95605
Target:  5'- -uCGGCgCCGACGGCGGcGGcgaagaGCGGCGGc -3'
miRNA:   3'- uuGUUGaGGCUGCUGCU-CC------UGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 60239 0.66 0.95605
Target:  5'- gGGCcgcCUCCGccGCGGCGGGaGCGGCGGc -3'
miRNA:   3'- -UUGuu-GAGGC--UGCUGCUCcUGCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 60313 0.68 0.89227
Target:  5'- -uCGGCUgaGACGAUcAGGugGACGAc -3'
miRNA:   3'- uuGUUGAggCUGCUGcUCCugCUGCU- -5'
23679 5' -53.8 NC_005261.1 + 62410 0.66 0.959805
Target:  5'- gAGCAGCUCCGcgccCGcCGAGGccaGCG-CGAg -3'
miRNA:   3'- -UUGUUGAGGCu---GCuGCUCC---UGCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.