miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 16290 0.67 0.778293
Target:  5'- cGGGgGGGCGccguCGGGCccAGcGGCGGCCGg -3'
miRNA:   3'- -CCUgCCUGCcu--GCCUG--UC-UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 13715 0.67 0.778293
Target:  5'- gGGGCGGGggugggGGugGGGguGGGCuuGGCCGc -3'
miRNA:   3'- -CCUGCCUg-----CCugCCUguCUCG--CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 12426 0.67 0.778293
Target:  5'- gGGGCGG-CGGAgGGcuuGCGGcGuCGGCCGc -3'
miRNA:   3'- -CCUGCCuGCCUgCC---UGUCuC-GCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 131643 0.67 0.802137
Target:  5'- aGGACcGACGGGCcccccGGGCgcaccgucugcgagGGuGCGACCGc -3'
miRNA:   3'- -CCUGcCUGCCUG-----CCUG--------------UCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 50637 0.67 0.813251
Target:  5'- -cGCGGGCGG-CGGGguG-GCG-CCGg -3'
miRNA:   3'- ccUGCCUGCCuGCCUguCuCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 99755 0.67 0.821623
Target:  5'- -cACGGccagcacguCGGACGGGgAGAGgCGGCCc -3'
miRNA:   3'- ccUGCCu--------GCCUGCCUgUCUC-GCUGGc -5'
23680 5' -58.2 NC_005261.1 + 27732 0.67 0.813251
Target:  5'- aGGAgCGGAgaCGcGCGGGCAGAGgaGCCGa -3'
miRNA:   3'- -CCU-GCCU--GCcUGCCUGUCUCgcUGGC- -5'
23680 5' -58.2 NC_005261.1 + 129561 0.67 0.821623
Target:  5'- aGACGG-CGGGCguagaGGAgGaGGCGGCCGc -3'
miRNA:   3'- cCUGCCuGCCUG-----CCUgUcUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 23871 0.67 0.820793
Target:  5'- gGGGCGGGCuugccccGGGCGGGCcggcuAGGGUGGgCu -3'
miRNA:   3'- -CCUGCCUG-------CCUGCCUG-----UCUCGCUgGc -5'
23680 5' -58.2 NC_005261.1 + 68731 0.67 0.820793
Target:  5'- cGGCGGGCGccGGCGGGaagaagcgcccgcCGGGGCG-CCGc -3'
miRNA:   3'- cCUGCCUGC--CUGCCU-------------GUCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 43779 0.67 0.821623
Target:  5'- gGGGCGGcgcGCGGA-GGGCgccgcgggugagGGGGCG-CCGg -3'
miRNA:   3'- -CCUGCC---UGCCUgCCUG------------UCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 60050 0.67 0.821623
Target:  5'- cGACGG-CGG-CGGcgaAGAGCGgcgGCCGg -3'
miRNA:   3'- cCUGCCuGCCuGCCug-UCUCGC---UGGC- -5'
23680 5' -58.2 NC_005261.1 + 98042 0.67 0.787237
Target:  5'- cGGuACuGGCGGccGCGGGCGGcGgGACCGc -3'
miRNA:   3'- -CC-UGcCUGCC--UGCCUGUCuCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 55186 0.68 0.721377
Target:  5'- gGGGCGGAuCGGcgcacggcguagcGCGGAUccGGCGGCCc -3'
miRNA:   3'- -CCUGCCU-GCC-------------UGCCUGucUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 79707 0.68 0.760044
Target:  5'- aGACcGGCGGGCGGcuguaGCAGAcGCcGCCGg -3'
miRNA:   3'- cCUGcCUGCCUGCC-----UGUCU-CGcUGGC- -5'
23680 5' -58.2 NC_005261.1 + 16181 0.68 0.74137
Target:  5'- cGGGCGuGGCGGG-GGugGGcGGgGGCCGc -3'
miRNA:   3'- -CCUGC-CUGCCUgCCugUC-UCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 38939 0.68 0.731894
Target:  5'- cGGCGGcCGGGCGGGCc--GCGGCgCGc -3'
miRNA:   3'- cCUGCCuGCCUGCCUGucuCGCUG-GC- -5'
23680 5' -58.2 NC_005261.1 + 23627 0.68 0.74137
Target:  5'- gGGGCGcGGCGGG-GGuCGG-GCGGCUGg -3'
miRNA:   3'- -CCUGC-CUGCCUgCCuGUCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 111506 0.68 0.74137
Target:  5'- gGGGCGGACGaGcgaaauggcaaGCGaGACAGcgGGCGACgCGu -3'
miRNA:   3'- -CCUGCCUGC-C-----------UGC-CUGUC--UCGCUG-GC- -5'
23680 5' -58.2 NC_005261.1 + 59790 0.68 0.731894
Target:  5'- cGACGGcgGCGGGCGG-CAGgccGGCGuggcGCCGc -3'
miRNA:   3'- cCUGCC--UGCCUGCCuGUC---UCGC----UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.