miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 85936 0.66 0.86092
Target:  5'- --cUGGAUGG-CGGcCAGGGCG-CCGc -3'
miRNA:   3'- ccuGCCUGCCuGCCuGUCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 109884 0.66 0.837875
Target:  5'- -cGCGGGCGGGCGcccCGGGGCuacagccccugGACCGc -3'
miRNA:   3'- ccUGCCUGCCUGCcu-GUCUCG-----------CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 59724 0.66 0.853425
Target:  5'- cGcCGGGCGGcaGCGG-CGGcgcGCGGCCGc -3'
miRNA:   3'- cCuGCCUGCC--UGCCuGUCu--CGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 13396 0.66 0.845741
Target:  5'- -cGCGGucuCGGAgCGG-UAGGGCGACgCGa -3'
miRNA:   3'- ccUGCCu--GCCU-GCCuGUCUCGCUG-GC- -5'
23680 5' -58.2 NC_005261.1 + 77680 0.67 0.787237
Target:  5'- gGGcGCGGACGGGcCGGGCuacGA-CGGCCc -3'
miRNA:   3'- -CC-UGCCUGCCU-GCCUGu--CUcGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 68731 0.67 0.820793
Target:  5'- cGGCGGGCGccGGCGGGaagaagcgcccgcCGGGGCG-CCGc -3'
miRNA:   3'- cCUGCCUGC--CUGCCU-------------GUCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 129561 0.67 0.821623
Target:  5'- aGACGG-CGGGCguagaGGAgGaGGCGGCCGc -3'
miRNA:   3'- cCUGCCuGCCUG-----CCUgUcUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 60050 0.67 0.821623
Target:  5'- cGACGG-CGG-CGGcgaAGAGCGgcgGCCGg -3'
miRNA:   3'- cCUGCCuGCCuGCCug-UCUCGC---UGGC- -5'
23680 5' -58.2 NC_005261.1 + 99755 0.67 0.821623
Target:  5'- -cACGGccagcacguCGGACGGGgAGAGgCGGCCc -3'
miRNA:   3'- ccUGCCu--------GCCUGCCUgUCUC-GCUGGc -5'
23680 5' -58.2 NC_005261.1 + 89270 0.67 0.79605
Target:  5'- cGGGC-GACGGGCuGGCGuucccGGCGGCCGc -3'
miRNA:   3'- -CCUGcCUGCCUGcCUGUc----UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 43779 0.67 0.821623
Target:  5'- gGGGCGGcgcGCGGA-GGGCgccgcgggugagGGGGCG-CCGg -3'
miRNA:   3'- -CCUGCC---UGCCUgCCUG------------UCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 50637 0.67 0.813251
Target:  5'- -cGCGGGCGG-CGGGguG-GCG-CCGg -3'
miRNA:   3'- ccUGCCUGCCuGCCUguCuCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 23871 0.67 0.820793
Target:  5'- gGGGCGGGCuugccccGGGCGGGCcggcuAGGGUGGgCu -3'
miRNA:   3'- -CCUGCCUG-------CCUGCCUG-----UCUCGCUgGc -5'
23680 5' -58.2 NC_005261.1 + 74414 0.67 0.804724
Target:  5'- cGGccGCGGGCGGGaGGGCcgaggAGAGCGcCCc -3'
miRNA:   3'- -CC--UGCCUGCCUgCCUG-----UCUCGCuGGc -5'
23680 5' -58.2 NC_005261.1 + 74668 0.67 0.804724
Target:  5'- aGGcCGGggacGCGGACGcGACcgcgcgGGAGCuGGCCGc -3'
miRNA:   3'- -CCuGCC----UGCCUGC-CUG------UCUCG-CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 98042 0.67 0.787237
Target:  5'- cGGuACuGGCGGccGCGGGCGGcGgGACCGc -3'
miRNA:   3'- -CC-UGcCUGCC--UGCCUGUCuCgCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 30679 0.67 0.79605
Target:  5'- gGGACGGggACGGGgacggGGACGGGGaGGCCc -3'
miRNA:   3'- -CCUGCC--UGCCUg----CCUGUCUCgCUGGc -5'
23680 5' -58.2 NC_005261.1 + 38277 0.67 0.790779
Target:  5'- gGGGCGGcuggugcacGCGGugcuggcccgccugaGCGcGCAGGGCGGCCc -3'
miRNA:   3'- -CCUGCC---------UGCC---------------UGCcUGUCUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 129649 0.67 0.787237
Target:  5'- cGGugGcGGCGG-CGGcgGCAGGGgcggGACCGg -3'
miRNA:   3'- -CCugC-CUGCCuGCC--UGUCUCg---CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 77223 0.67 0.79605
Target:  5'- uGGcCGGGgGGGaGGAgcCAGAGCGcaGCCGg -3'
miRNA:   3'- -CCuGCCUgCCUgCCU--GUCUCGC--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.