Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 15716 | 0.69 | 0.712707 |
Target: 5'- uGGGUGGACGGcgaACGcGACGGGGCcguccgcgcgcaGGCCGa -3' miRNA: 3'- -CCUGCCUGCC---UGC-CUGUCUCG------------CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 15958 | 0.68 | 0.731894 |
Target: 5'- gGGGCGaguGGCGGGCgGGGgAGGGCccgGGCCGc -3' miRNA: 3'- -CCUGC---CUGCCUG-CCUgUCUCG---CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 16181 | 0.68 | 0.74137 |
Target: 5'- cGGGCGuGGCGGG-GGugGGcGGgGGCCGc -3' miRNA: 3'- -CCUGC-CUGCCUgCCugUC-UCgCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 16290 | 0.67 | 0.778293 |
Target: 5'- cGGGgGGGCGccguCGGGCccAGcGGCGGCCGg -3' miRNA: 3'- -CCUgCCUGCcu--GCCUG--UC-UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 17750 | 0.7 | 0.604295 |
Target: 5'- cGGGCGGACuucugGGGCGGugGuGGCGucACCa -3' miRNA: 3'- -CCUGCCUG-----CCUGCCugUcUCGC--UGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 18664 | 0.66 | 0.86092 |
Target: 5'- cGGGCGGGCcccaGCGGGCGaAGgGGCCc -3' miRNA: 3'- -CCUGCCUGcc--UGCCUGUcUCgCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 19956 | 0.78 | 0.246478 |
Target: 5'- gGGugGGGCGGccuCGGcuGCGGcAGCGACCGc -3' miRNA: 3'- -CCugCCUGCCu--GCC--UGUC-UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 20553 | 0.69 | 0.683464 |
Target: 5'- uGGACGuGGCGG-CGGGCuGcgcAGCGgcGCCGg -3' miRNA: 3'- -CCUGC-CUGCCuGCCUGuC---UCGC--UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 22100 | 0.72 | 0.526297 |
Target: 5'- gGGGCGGgaggGCGGuguGCGGAgAGuGCGugCGg -3' miRNA: 3'- -CCUGCC----UGCC---UGCCUgUCuCGCugGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 22443 | 1.11 | 0.001552 |
Target: 5'- cGGACGGACGGACGGACAGAGCGACCGa -3' miRNA: 3'- -CCUGCCUGCCUGCCUGUCUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23546 | 0.72 | 0.497975 |
Target: 5'- aGGCGGcaggagccgucGCaGGugGGGCAGGGCuGGCCGu -3' miRNA: 3'- cCUGCC-----------UG-CCugCCUGUCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23627 | 0.68 | 0.74137 |
Target: 5'- gGGGCGcGGCGGG-GGuCGG-GCGGCUGg -3' miRNA: 3'- -CCUGC-CUGCCUgCCuGUCuCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23772 | 0.7 | 0.623119 |
Target: 5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3' miRNA: 3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23829 | 0.7 | 0.623119 |
Target: 5'- cGGGCGGGCcggcuagGGugGGcucgcCGGGGCaGGCCGg -3' miRNA: 3'- -CCUGCCUG-------CCugCCu----GUCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23871 | 0.67 | 0.820793 |
Target: 5'- gGGGCGGGCuugccccGGGCGGGCcggcuAGGGUGGgCu -3' miRNA: 3'- -CCUGCCUG-------CCUGCCUG-----UCUCGCUgGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23984 | 0.66 | 0.837875 |
Target: 5'- cGGGCGGGCuaguCGcGGCGGAGCGcuGCUGc -3' miRNA: 3'- -CCUGCCUGccu-GC-CUGUCUCGC--UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 26875 | 0.71 | 0.555203 |
Target: 5'- gGGGCGGG-GGugGGugGGGGgGGgCGg -3' miRNA: 3'- -CCUGCCUgCCugCCugUCUCgCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 27252 | 0.78 | 0.240782 |
Target: 5'- gGGugGGGCGGgguguGCGGGCAGccCGGCCGg -3' miRNA: 3'- -CCugCCUGCC-----UGCCUGUCucGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 27334 | 0.69 | 0.673625 |
Target: 5'- gGGGCGGaACGGG-GGAaagggGGAGCGgcGCCGg -3' miRNA: 3'- -CCUGCC-UGCCUgCCUg----UCUCGC--UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 27456 | 0.68 | 0.750756 |
Target: 5'- cGGCGGGCcgccccgcgGGGCGGGCAGgcccuccccgGGCGcACCu -3' miRNA: 3'- cCUGCCUG---------CCUGCCUGUC----------UCGC-UGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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