Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 373 | 0.7 | 0.604295 |
Target: 5'- cGGugGcGGCGGugGcGGCGGcGGCGGCgGc -3' miRNA: 3'- -CCugC-CUGCCugC-CUGUC-UCGCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 440 | 0.68 | 0.730942 |
Target: 5'- cGGACcgGGACGG--GGACGGGGgccgcgaCGGCCGg -3' miRNA: 3'- -CCUG--CCUGCCugCCUGUCUC-------GCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 528 | 0.82 | 0.148392 |
Target: 5'- cGGGCGGGCGGG-GGGCAGGGCGGaCGg -3' miRNA: 3'- -CCUGCCUGCCUgCCUGUCUCGCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 1006 | 0.67 | 0.813251 |
Target: 5'- gGGGCGGG-GGGCGG--GGGGCGGgUGg -3' miRNA: 3'- -CCUGCCUgCCUGCCugUCUCGCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 1041 | 0.73 | 0.461322 |
Target: 5'- aGGGCGG-CGGGCGG-CGGcguuAGCGGCgCGg -3' miRNA: 3'- -CCUGCCuGCCUGCCuGUC----UCGCUG-GC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 2627 | 0.79 | 0.221184 |
Target: 5'- cGGGCGGcauggggcccagcacGCGGGCGGGCAGcGGCGGCUc -3' miRNA: 3'- -CCUGCC---------------UGCCUGCCUGUC-UCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 2801 | 0.7 | 0.634032 |
Target: 5'- cGGCGGcCGGGagGGGCcGGGCGGCCc -3' miRNA: 3'- cCUGCCuGCCUg-CCUGuCUCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 4397 | 0.67 | 0.778293 |
Target: 5'- cGGcCGGGCGG-CGG-CGGcGCGcuGCCGg -3' miRNA: 3'- -CCuGCCUGCCuGCCuGUCuCGC--UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 4572 | 0.68 | 0.769226 |
Target: 5'- -cGCGGGCGGGucCGG-CGGGGCGcCCc -3' miRNA: 3'- ccUGCCUGCCU--GCCuGUCUCGCuGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 7991 | 0.66 | 0.837875 |
Target: 5'- cGGugGGAgaGGGgGGAgAGGGgGGCUu -3' miRNA: 3'- -CCugCCUg-CCUgCCUgUCUCgCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 9644 | 0.66 | 0.852665 |
Target: 5'- uGGGUGGGCGGGgcccacuCGGGCGG-GCGcCCa -3' miRNA: 3'- -CCUGCCUGCCU-------GCCUGUCuCGCuGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 11097 | 0.69 | 0.703013 |
Target: 5'- gGGGCgGGACGcGACgGGACgAGAuGCG-CCGg -3' miRNA: 3'- -CCUG-CCUGC-CUG-CCUG-UCU-CGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 11423 | 0.79 | 0.229721 |
Target: 5'- aGGAgGaGGCGGGCGGGgGGGGCGGCgGa -3' miRNA: 3'- -CCUgC-CUGCCUGCCUgUCUCGCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 11467 | 0.76 | 0.316637 |
Target: 5'- cGGAgCGGgcGCGGAgGGGCGGGGCGgggguGCCGg -3' miRNA: 3'- -CCU-GCC--UGCCUgCCUGUCUCGC-----UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 12426 | 0.67 | 0.778293 |
Target: 5'- gGGGCGG-CGGAgGGcuuGCGGcGuCGGCCGc -3' miRNA: 3'- -CCUGCCuGCCUgCC---UGUCuC-GCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 13092 | 0.72 | 0.535874 |
Target: 5'- cGGCGGGCGG-CGGGCucGGcucgggggcgucGGCGGCCGc -3' miRNA: 3'- cCUGCCUGCCuGCCUG--UC------------UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 13396 | 0.66 | 0.845741 |
Target: 5'- -cGCGGucuCGGAgCGG-UAGGGCGACgCGa -3' miRNA: 3'- ccUGCCu--GCCU-GCCuGUCUCGCUG-GC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 13684 | 0.73 | 0.461322 |
Target: 5'- gGGGCGcGCGGGCgugGGGCGGGGCgGGCUGg -3' miRNA: 3'- -CCUGCcUGCCUG---CCUGUCUCG-CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 13715 | 0.67 | 0.778293 |
Target: 5'- gGGGCGGGggugggGGugGGGguGGGCuuGGCCGc -3' miRNA: 3'- -CCUGCCUg-----CCugCCUguCUCG--CUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 15481 | 0.68 | 0.760967 |
Target: 5'- cGGCGGACacgcgccgcucgcuGCGGGCGGGGCGugUGu -3' miRNA: 3'- cCUGCCUGcc------------UGCCUGUCUCGCugGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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