Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 7991 | 0.66 | 0.837875 |
Target: 5'- cGGugGGAgaGGGgGGAgAGGGgGGCUu -3' miRNA: 3'- -CCugCCUg-CCUgCCUgUCUCgCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 32384 | 0.66 | 0.86092 |
Target: 5'- aGGCGcGGCGcGGCGGcguccCGGAGCGcguGCCGc -3' miRNA: 3'- cCUGC-CUGC-CUGCCu----GUCUCGC---UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 128507 | 0.66 | 0.837875 |
Target: 5'- cGACGcGGCGG-CGGagGCAGccuccuGGCGGCUGg -3' miRNA: 3'- cCUGC-CUGCCuGCC--UGUC------UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 68694 | 0.66 | 0.853425 |
Target: 5'- gGGGcCGGcGCGGAC-GACGGcGGCG-CCGg -3' miRNA: 3'- -CCU-GCC-UGCCUGcCUGUC-UCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 85936 | 0.66 | 0.86092 |
Target: 5'- --cUGGAUGG-CGGcCAGGGCG-CCGc -3' miRNA: 3'- ccuGCCUGCCuGCCuGUCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 40170 | 0.66 | 0.853425 |
Target: 5'- aGugGGGCaGGGCccACAGGGgGGCCa -3' miRNA: 3'- cCugCCUG-CCUGccUGUCUCgCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 121775 | 0.66 | 0.844963 |
Target: 5'- cGGugGGguggccgcggccgGCGGGCuGGGCAGGgggcgcGUGGCUGg -3' miRNA: 3'- -CCugCC-------------UGCCUG-CCUGUCU------CGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 13396 | 0.66 | 0.845741 |
Target: 5'- -cGCGGucuCGGAgCGG-UAGGGCGACgCGa -3' miRNA: 3'- ccUGCCu--GCCU-GCCuGUCUCGCUG-GC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 76444 | 0.66 | 0.829834 |
Target: 5'- uGGCGGACGcgcccGACGGcgACGGcGGCG-CCGg -3' miRNA: 3'- cCUGCCUGC-----CUGCC--UGUC-UCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 23984 | 0.66 | 0.837875 |
Target: 5'- cGGGCGGGCuaguCGcGGCGGAGCGcuGCUGc -3' miRNA: 3'- -CCUGCCUGccu-GC-CUGUCUCGC--UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 97054 | 0.66 | 0.853425 |
Target: 5'- aGGGCGGGgGGcgGCGGGCAcGAuccGCGucggaggcGCCGg -3' miRNA: 3'- -CCUGCCUgCC--UGCCUGU-CU---CGC--------UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 87823 | 0.66 | 0.845741 |
Target: 5'- gGGACGG--GGACGGggaACgAGAGCGAaaGa -3' miRNA: 3'- -CCUGCCugCCUGCC---UG-UCUCGCUggC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 126956 | 0.66 | 0.853425 |
Target: 5'- cGGGCGcGgGGGCGG-CAGcGCGAaCCGn -3' miRNA: 3'- -CCUGCcUgCCUGCCuGUCuCGCU-GGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 9644 | 0.66 | 0.852665 |
Target: 5'- uGGGUGGGCGGGgcccacuCGGGCGG-GCGcCCa -3' miRNA: 3'- -CCUGCCUGCCU-------GCCUGUCuCGCuGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 69934 | 0.66 | 0.853425 |
Target: 5'- gGGugGgGugGGAgcCGGggauaGCGGAGgGGCCu -3' miRNA: 3'- -CCugC-CugCCU--GCC-----UGUCUCgCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 74710 | 0.66 | 0.837875 |
Target: 5'- -cGCGGgcGCGGAacCGGGCcgcGGcAGCGGCCGc -3' miRNA: 3'- ccUGCC--UGCCU--GCCUG---UC-UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 100176 | 0.66 | 0.829834 |
Target: 5'- gGGACGcaacgccguGGCGG-CgGGGCAGcguGGCGGCCa -3' miRNA: 3'- -CCUGC---------CUGCCuG-CCUGUC---UCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 59724 | 0.66 | 0.853425 |
Target: 5'- cGcCGGGCGGcaGCGG-CGGcgcGCGGCCGc -3' miRNA: 3'- cCuGCCUGCC--UGCCuGUCu--CGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 94870 | 0.66 | 0.829834 |
Target: 5'- -cACGGccCGGGCGGGCGGcccGCGugCa -3' miRNA: 3'- ccUGCCu-GCCUGCCUGUCu--CGCugGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 78484 | 0.66 | 0.837875 |
Target: 5'- gGGAauCGGGCGaaGCGGACAGAcGCGAg-- -3' miRNA: 3'- -CCU--GCCUGCc-UGCCUGUCU-CGCUggc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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