miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 22443 1.11 0.001552
Target:  5'- cGGACGGACGGACGGACAGAGCGACCGa -3'
miRNA:   3'- -CCUGCCUGCCUGCCUGUCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 97594 0.86 0.07859
Target:  5'- cGGAgCGGGCGGAgCGGGCGGAGCGGgCGg -3'
miRNA:   3'- -CCU-GCCUGCCU-GCCUGUCUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 128070 0.85 0.08714
Target:  5'- uGGCGGGCGGGCGGGC-GAGCGAgCGg -3'
miRNA:   3'- cCUGCCUGCCUGCCUGuCUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 97621 0.84 0.106962
Target:  5'- nGGAgCGGGCGGAgCGGGCGGAGCGGgCGc -3'
miRNA:   3'- -CCU-GCCUGCCU-GCCUGUCUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 138199 0.82 0.148392
Target:  5'- cGGGCGGGCGGG-GGGCAGGGCGGaCGg -3'
miRNA:   3'- -CCUGCCUGCCUgCCUGUCUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 528 0.82 0.148392
Target:  5'- cGGGCGGGCGGG-GGGCAGGGCGGaCGg -3'
miRNA:   3'- -CCUGCCUGCCUgCCUGUCUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 2627 0.79 0.221184
Target:  5'- cGGGCGGcauggggcccagcacGCGGGCGGGCAGcGGCGGCUc -3'
miRNA:   3'- -CCUGCC---------------UGCCUGCCUGUC-UCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 11423 0.79 0.229721
Target:  5'- aGGAgGaGGCGGGCGGGgGGGGCGGCgGa -3'
miRNA:   3'- -CCUgC-CUGCCUGCCUgUCUCGCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 27252 0.78 0.240782
Target:  5'- gGGugGGGCGGgguguGCGGGCAGccCGGCCGg -3'
miRNA:   3'- -CCugCCUGCC-----UGCCUGUCucGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 72616 0.78 0.246478
Target:  5'- cGGGCGGGCGGGCGca-GGGGCGGCUu -3'
miRNA:   3'- -CCUGCCUGCCUGCcugUCUCGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 19956 0.78 0.246478
Target:  5'- gGGugGGGCGGccuCGGcuGCGGcAGCGACCGc -3'
miRNA:   3'- -CCugCCUGCCu--GCC--UGUC-UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 111410 0.78 0.246478
Target:  5'- cGGACGGGCGGgccacacgccgGCGGGCaAGAGacggaCGACCGg -3'
miRNA:   3'- -CCUGCCUGCC-----------UGCCUG-UCUC-----GCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 123167 0.77 0.289507
Target:  5'- gGGGCGGGCGcGCGGGCGuGGUGGCUGg -3'
miRNA:   3'- -CCUGCCUGCcUGCCUGUcUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 33801 0.77 0.296114
Target:  5'- -cGCGGGCGG-CGGGCuugucuuuGGGCGGCCGg -3'
miRNA:   3'- ccUGCCUGCCuGCCUGu-------CUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 97844 0.76 0.30899
Target:  5'- gGGGCGG-CGGGCGccgccgcGGCAGcGCGGCCGg -3'
miRNA:   3'- -CCUGCCuGCCUGC-------CUGUCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 11467 0.76 0.316637
Target:  5'- cGGAgCGGgcGCGGAgGGGCGGGGCGgggguGCCGg -3'
miRNA:   3'- -CCU-GCC--UGCCUgCCUGUCUCGC-----UGGC- -5'
23680 5' -58.2 NC_005261.1 + 97749 0.76 0.316637
Target:  5'- gGGGCgGGGCGGGCucGGCGGcGCGGCCGg -3'
miRNA:   3'- -CCUG-CCUGCCUGc-CUGUCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 135255 0.76 0.338213
Target:  5'- cGGGCGcGCGGAUGGACAucauGCGGCCu -3'
miRNA:   3'- -CCUGCcUGCCUGCCUGUcu--CGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 74348 0.75 0.345639
Target:  5'- aGGCGcGGCGG-CGGAaGGGGCGGCCGc -3'
miRNA:   3'- cCUGC-CUGCCuGCCUgUCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 74864 0.75 0.345639
Target:  5'- cGGGCGGAgGaGGCGGACGcGGCGGCgGc -3'
miRNA:   3'- -CCUGCCUgC-CUGCCUGUcUCGCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.