Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23680 | 5' | -58.2 | NC_005261.1 | + | 85936 | 0.66 | 0.86092 |
Target: 5'- --cUGGAUGG-CGGcCAGGGCG-CCGc -3' miRNA: 3'- ccuGCCUGCCuGCCuGUCUCGCuGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 123167 | 0.77 | 0.289507 |
Target: 5'- gGGGCGGGCGcGCGGGCGuGGUGGCUGg -3' miRNA: 3'- -CCUGCCUGCcUGCCUGUcUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 33801 | 0.77 | 0.296114 |
Target: 5'- -cGCGGGCGG-CGGGCuugucuuuGGGCGGCCGg -3' miRNA: 3'- ccUGCCUGCCuGCCUGu-------CUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 97844 | 0.76 | 0.30899 |
Target: 5'- gGGGCGG-CGGGCGccgccgcGGCAGcGCGGCCGg -3' miRNA: 3'- -CCUGCCuGCCUGC-------CUGUCuCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 97749 | 0.76 | 0.316637 |
Target: 5'- gGGGCgGGGCGGGCucGGCGGcGCGGCCGg -3' miRNA: 3'- -CCUG-CCUGCCUGc-CUGUCuCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 11467 | 0.76 | 0.316637 |
Target: 5'- cGGAgCGGgcGCGGAgGGGCGGGGCGgggguGCCGg -3' miRNA: 3'- -CCU-GCC--UGCCUgCCUGUCUCGC-----UGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 135255 | 0.76 | 0.338213 |
Target: 5'- cGGGCGcGCGGAUGGACAucauGCGGCCu -3' miRNA: 3'- -CCUGCcUGCCUGCCUGUcu--CGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 74348 | 0.75 | 0.345639 |
Target: 5'- aGGCGcGGCGG-CGGAaGGGGCGGCCGc -3' miRNA: 3'- cCUGC-CUGCCuGCCUgUCUCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 74864 | 0.75 | 0.345639 |
Target: 5'- cGGGCGGAgGaGGCGGACGcGGCGGCgGc -3' miRNA: 3'- -CCUGCCUgC-CUGCCUGUcUCGCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 72616 | 0.78 | 0.246478 |
Target: 5'- cGGGCGGGCGGGCGca-GGGGCGGCUu -3' miRNA: 3'- -CCUGCCUGCCUGCcugUCUCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 19956 | 0.78 | 0.246478 |
Target: 5'- gGGugGGGCGGccuCGGcuGCGGcAGCGACCGc -3' miRNA: 3'- -CCugCCUGCCu--GCC--UGUC-UCGCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 111410 | 0.78 | 0.246478 |
Target: 5'- cGGACGGGCGGgccacacgccgGCGGGCaAGAGacggaCGACCGg -3' miRNA: 3'- -CCUGCCUGCC-----------UGCCUG-UCUC-----GCUGGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 97594 | 0.86 | 0.07859 |
Target: 5'- cGGAgCGGGCGGAgCGGGCGGAGCGGgCGg -3' miRNA: 3'- -CCU-GCCUGCCU-GCCUGUCUCGCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 128070 | 0.85 | 0.08714 |
Target: 5'- uGGCGGGCGGGCGGGC-GAGCGAgCGg -3' miRNA: 3'- cCUGCCUGCCUGCCUGuCUCGCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 97621 | 0.84 | 0.106962 |
Target: 5'- nGGAgCGGGCGGAgCGGGCGGAGCGGgCGc -3' miRNA: 3'- -CCU-GCCUGCCU-GCCUGUCUCGCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 528 | 0.82 | 0.148392 |
Target: 5'- cGGGCGGGCGGG-GGGCAGGGCGGaCGg -3' miRNA: 3'- -CCUGCCUGCCUgCCUGUCUCGCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 138199 | 0.82 | 0.148392 |
Target: 5'- cGGGCGGGCGGG-GGGCAGGGCGGaCGg -3' miRNA: 3'- -CCUGCCUGCCUgCCUGUCUCGCUgGC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 2627 | 0.79 | 0.221184 |
Target: 5'- cGGGCGGcauggggcccagcacGCGGGCGGGCAGcGGCGGCUc -3' miRNA: 3'- -CCUGCC---------------UGCCUGCCUGUC-UCGCUGGc -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 11423 | 0.79 | 0.229721 |
Target: 5'- aGGAgGaGGCGGGCGGGgGGGGCGGCgGa -3' miRNA: 3'- -CCUgC-CUGCCUGCCUgUCUCGCUGgC- -5' |
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23680 | 5' | -58.2 | NC_005261.1 | + | 27252 | 0.78 | 0.240782 |
Target: 5'- gGGugGGGCGGgguguGCGGGCAGccCGGCCGg -3' miRNA: 3'- -CCugCCUGCC-----UGCCUGUCucGCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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