miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23680 5' -58.2 NC_005261.1 + 138199 0.82 0.148392
Target:  5'- cGGGCGGGCGGG-GGGCAGGGCGGaCGg -3'
miRNA:   3'- -CCUGCCUGCCUgCCUGUCUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 138111 0.68 0.730942
Target:  5'- cGGACcgGGACGG--GGACGGGGgccgcgaCGGCCGg -3'
miRNA:   3'- -CCUG--CCUGCCugCCUGUCUC-------GCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 138044 0.7 0.604295
Target:  5'- cGGugGcGGCGGugGcGGCGGcGGCGGCgGc -3'
miRNA:   3'- -CCugC-CUGCCugC-CUGUC-UCGCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 136572 0.71 0.594412
Target:  5'- aGGcGCGGGUGGGCGGgcGCAGAGaCGcCCGg -3'
miRNA:   3'- -CC-UGCCUGCCUGCC--UGUCUC-GCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 135255 0.76 0.338213
Target:  5'- cGGGCGcGCGGAUGGACAucauGCGGCCu -3'
miRNA:   3'- -CCUGCcUGCCUGCCUGUcu--CGCUGGc -5'
23680 5' -58.2 NC_005261.1 + 134971 0.71 0.594412
Target:  5'- cGACGcaGACGGcgaGGACGGGGCcGCCGg -3'
miRNA:   3'- cCUGC--CUGCCug-CCUGUCUCGcUGGC- -5'
23680 5' -58.2 NC_005261.1 + 134943 0.69 0.703013
Target:  5'- aGGACGaGCcGAUGGGCgAGGGCG-CCGg -3'
miRNA:   3'- -CCUGCcUGcCUGCCUG-UCUCGCuGGC- -5'
23680 5' -58.2 NC_005261.1 + 132899 0.69 0.663755
Target:  5'- cGGGCGccGCGGGCGGcGCcGAGCGGCgGc -3'
miRNA:   3'- -CCUGCc-UGCCUGCC-UGuCUCGCUGgC- -5'
23680 5' -58.2 NC_005261.1 + 132639 0.71 0.594412
Target:  5'- aGGacGCGGGCGcGGCGGcCcuAGCGGCCGc -3'
miRNA:   3'- -CC--UGCCUGC-CUGCCuGucUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 131643 0.67 0.802137
Target:  5'- aGGACcGACGGGCcccccGGGCgcaccgucugcgagGGuGCGACCGc -3'
miRNA:   3'- -CCUGcCUGCCUG-----CCUG--------------UCuCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 129740 0.68 0.760044
Target:  5'- aGGGCGG-CGGGgccCGGccuuCAGcaccGGCGACCGc -3'
miRNA:   3'- -CCUGCCuGCCU---GCCu---GUC----UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 129649 0.67 0.787237
Target:  5'- cGGugGcGGCGG-CGGcgGCAGGGgcggGACCGg -3'
miRNA:   3'- -CCugC-CUGCCuGCC--UGUCUCg---CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 129561 0.67 0.821623
Target:  5'- aGACGG-CGGGCguagaGGAgGaGGCGGCCGc -3'
miRNA:   3'- cCUGCCuGCCUG-----CCUgUcUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 128507 0.66 0.837875
Target:  5'- cGACGcGGCGG-CGGagGCAGccuccuGGCGGCUGg -3'
miRNA:   3'- cCUGC-CUGCCuGCC--UGUC------UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 128101 0.7 0.653862
Target:  5'- cGGGCGaGCGGcGCGGcGCGGGGUcgGGCCGa -3'
miRNA:   3'- -CCUGCcUGCC-UGCC-UGUCUCG--CUGGC- -5'
23680 5' -58.2 NC_005261.1 + 128070 0.85 0.08714
Target:  5'- uGGCGGGCGGGCGGGC-GAGCGAgCGg -3'
miRNA:   3'- cCUGCCUGCCUGCCUGuCUCGCUgGC- -5'
23680 5' -58.2 NC_005261.1 + 127815 0.67 0.803863
Target:  5'- cGGCGGgccgcucgcgcucGCGGccgcgagcaGCGGACGGGGCGGUCGc -3'
miRNA:   3'- cCUGCC-------------UGCC---------UGCCUGUCUCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 127657 0.69 0.692284
Target:  5'- gGGGCGcGCGGguucgggGCgGGACGGcGGCGGCCGc -3'
miRNA:   3'- -CCUGCcUGCC-------UG-CCUGUC-UCGCUGGC- -5'
23680 5' -58.2 NC_005261.1 + 127625 0.71 0.545511
Target:  5'- cGGcCGGcCGGACGcGACGGcGGCGgcGCCGg -3'
miRNA:   3'- -CCuGCCuGCCUGC-CUGUC-UCGC--UGGC- -5'
23680 5' -58.2 NC_005261.1 + 127313 0.71 0.562017
Target:  5'- uGGCGGugGGGCccugccgcccgcggGGGcCGGAGCGGCgGg -3'
miRNA:   3'- cCUGCCugCCUG--------------CCU-GUCUCGCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.