Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23686 | 3' | -55.4 | NC_005261.1 | + | 18708 | 1.09 | 0.003431 |
Target: 5'- cACGUCGGCGAAGCAGAGAUCGUCGGGc -3' miRNA: 3'- -UGCAGCCGCUUCGUCUCUAGCAGCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 24189 | 0.84 | 0.160744 |
Target: 5'- uCGUCGGCGAGGCuccaGGAUCGUCGGcGg -3' miRNA: 3'- uGCAGCCGCUUCGuc--UCUAGCAGCC-C- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 14082 | 0.83 | 0.177793 |
Target: 5'- cACGUCGGCGAAGCAcucGcGGUCGUCGaGGc -3' miRNA: 3'- -UGCAGCCGCUUCGU---CuCUAGCAGC-CC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 81345 | 0.83 | 0.182299 |
Target: 5'- cCGUCGGCGggGCGGGGGcUUG-CGGGg -3' miRNA: 3'- uGCAGCCGCuuCGUCUCU-AGCaGCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 15024 | 0.78 | 0.33036 |
Target: 5'- uUGUCGGCGGgugccgggggcguAGCGGGGGggGUCGGGg -3' miRNA: 3'- uGCAGCCGCU-------------UCGUCUCUagCAGCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 43187 | 0.78 | 0.338614 |
Target: 5'- cCGcCGGCGAGGCAGAGGUgGUgCGGc -3' miRNA: 3'- uGCaGCCGCUUCGUCUCUAgCA-GCCc -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 23413 | 0.76 | 0.411633 |
Target: 5'- aACGUcaaCGGCGAGGCGcuGcgCGUCGGGg -3' miRNA: 3'- -UGCA---GCCGCUUCGUcuCuaGCAGCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 96830 | 0.74 | 0.512879 |
Target: 5'- cUGUCGGCGGugucgaGGCcGGGGUCGaCGGGg -3' miRNA: 3'- uGCAGCCGCU------UCGuCUCUAGCaGCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 107565 | 0.73 | 0.572253 |
Target: 5'- cACGgcagCGGCGAAGUAGGGcgCGaaggcCGGGu -3' miRNA: 3'- -UGCa---GCCGCUUCGUCUCuaGCa----GCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 12809 | 0.73 | 0.58233 |
Target: 5'- gGCGUCGcugccguccuccGCGAAGgaAGAGuccUCGUCGGGg -3' miRNA: 3'- -UGCAGC------------CGCUUCg-UCUCu--AGCAGCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 137037 | 0.73 | 0.612747 |
Target: 5'- gGCGUCGGUGGAGgGcGGAcCGUCGGc -3' miRNA: 3'- -UGCAGCCGCUUCgUcUCUaGCAGCCc -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 13088 | 0.72 | 0.643294 |
Target: 5'- cCGUCGGCGGgcGGCGG-GcUCGgcUCGGGg -3' miRNA: 3'- uGCAGCCGCU--UCGUCuCuAGC--AGCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 13117 | 0.72 | 0.663627 |
Target: 5'- gGCGUCGGCGGccGCGGGGcgcguGUgGUCGGu -3' miRNA: 3'- -UGCAGCCGCUu-CGUCUC-----UAgCAGCCc -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 97482 | 0.72 | 0.67376 |
Target: 5'- cCGUCGGgGggGCccuuGGGggCGcCGGGg -3' miRNA: 3'- uGCAGCCgCuuCGu---CUCuaGCaGCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 108903 | 0.72 | 0.67376 |
Target: 5'- cCGcCGGCG-AGCGGGGcgCGgggUCGGGg -3' miRNA: 3'- uGCaGCCGCuUCGUCUCuaGC---AGCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 34826 | 0.71 | 0.693917 |
Target: 5'- -gGUCGGaguCGGAGgAGucGUCGUCGGGg -3' miRNA: 3'- ugCAGCC---GCUUCgUCucUAGCAGCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 75318 | 0.71 | 0.723745 |
Target: 5'- cCGUCGGCGGcgcGCGGAGcccugugaccuUCGUCGGc -3' miRNA: 3'- uGCAGCCGCUu--CGUCUCu----------AGCAGCCc -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 71959 | 0.7 | 0.733544 |
Target: 5'- gGCGUCGGCGcggggcGCGGAGcgCG-CGGc -3' miRNA: 3'- -UGCAGCCGCuu----CGUCUCuaGCaGCCc -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 129653 | 0.7 | 0.743256 |
Target: 5'- gGCGgCGGCGGcGGCAGGGG-CGggacCGGGg -3' miRNA: 3'- -UGCaGCCGCU-UCGUCUCUaGCa---GCCC- -5' |
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23686 | 3' | -55.4 | NC_005261.1 | + | 80059 | 0.7 | 0.752872 |
Target: 5'- cUGgCGGCGGGcGCGGGGggCGUgGGGg -3' miRNA: 3'- uGCaGCCGCUU-CGUCUCuaGCAgCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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