miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23686 3' -55.4 NC_005261.1 + 62745 0.66 0.938762
Target:  5'- -gGagGGCGGccaggucgcuguGGgAGAGGUCGcCGGGg -3'
miRNA:   3'- ugCagCCGCU------------UCgUCUCUAGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 13117 0.72 0.663627
Target:  5'- gGCGUCGGCGGccGCGGGGcgcguGUgGUCGGu -3'
miRNA:   3'- -UGCAGCCGCUu-CGUCUC-----UAgCAGCCc -5'
23686 3' -55.4 NC_005261.1 + 97482 0.72 0.67376
Target:  5'- cCGUCGGgGggGCccuuGGGggCGcCGGGg -3'
miRNA:   3'- uGCAGCCgCuuCGu---CUCuaGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 108903 0.72 0.67376
Target:  5'- cCGcCGGCG-AGCGGGGcgCGgggUCGGGg -3'
miRNA:   3'- uGCaGCCGCuUCGUCUCuaGC---AGCCC- -5'
23686 3' -55.4 NC_005261.1 + 34826 0.71 0.693917
Target:  5'- -gGUCGGaguCGGAGgAGucGUCGUCGGGg -3'
miRNA:   3'- ugCAGCC---GCUUCgUCucUAGCAGCCC- -5'
23686 3' -55.4 NC_005261.1 + 75318 0.71 0.723745
Target:  5'- cCGUCGGCGGcgcGCGGAGcccugugaccuUCGUCGGc -3'
miRNA:   3'- uGCAGCCGCUu--CGUCUCu----------AGCAGCCc -5'
23686 3' -55.4 NC_005261.1 + 71959 0.7 0.733544
Target:  5'- gGCGUCGGCGcggggcGCGGAGcgCG-CGGc -3'
miRNA:   3'- -UGCAGCCGCuu----CGUCUCuaGCaGCCc -5'
23686 3' -55.4 NC_005261.1 + 129653 0.7 0.743256
Target:  5'- gGCGgCGGCGGcGGCAGGGG-CGggacCGGGg -3'
miRNA:   3'- -UGCaGCCGCU-UCGUCUCUaGCa---GCCC- -5'
23686 3' -55.4 NC_005261.1 + 24368 0.7 0.752872
Target:  5'- uCGUCGGCGGugcucccGguGGGcUCGUCGGcGg -3'
miRNA:   3'- uGCAGCCGCUu------CguCUCuAGCAGCC-C- -5'
23686 3' -55.4 NC_005261.1 + 13088 0.72 0.643294
Target:  5'- cCGUCGGCGGgcGGCGG-GcUCGgcUCGGGg -3'
miRNA:   3'- uGCAGCCGCU--UCGUCuCuAGC--AGCCC- -5'
23686 3' -55.4 NC_005261.1 + 137037 0.73 0.612747
Target:  5'- gGCGUCGGUGGAGgGcGGAcCGUCGGc -3'
miRNA:   3'- -UGCAGCCGCUUCgUcUCUaGCAGCCc -5'
23686 3' -55.4 NC_005261.1 + 12809 0.73 0.58233
Target:  5'- gGCGUCGcugccguccuccGCGAAGgaAGAGuccUCGUCGGGg -3'
miRNA:   3'- -UGCAGC------------CGCUUCg-UCUCu--AGCAGCCC- -5'
23686 3' -55.4 NC_005261.1 + 24189 0.84 0.160744
Target:  5'- uCGUCGGCGAGGCuccaGGAUCGUCGGcGg -3'
miRNA:   3'- uGCAGCCGCUUCGuc--UCUAGCAGCC-C- -5'
23686 3' -55.4 NC_005261.1 + 14082 0.83 0.177793
Target:  5'- cACGUCGGCGAAGCAcucGcGGUCGUCGaGGc -3'
miRNA:   3'- -UGCAGCCGCUUCGU---CuCUAGCAGC-CC- -5'
23686 3' -55.4 NC_005261.1 + 81345 0.83 0.182299
Target:  5'- cCGUCGGCGggGCGGGGGcUUG-CGGGg -3'
miRNA:   3'- uGCAGCCGCuuCGUCUCU-AGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 15024 0.78 0.33036
Target:  5'- uUGUCGGCGGgugccgggggcguAGCGGGGGggGUCGGGg -3'
miRNA:   3'- uGCAGCCGCU-------------UCGUCUCUagCAGCCC- -5'
23686 3' -55.4 NC_005261.1 + 43187 0.78 0.338614
Target:  5'- cCGcCGGCGAGGCAGAGGUgGUgCGGc -3'
miRNA:   3'- uGCaGCCGCUUCGUCUCUAgCA-GCCc -5'
23686 3' -55.4 NC_005261.1 + 23413 0.76 0.411633
Target:  5'- aACGUcaaCGGCGAGGCGcuGcgCGUCGGGg -3'
miRNA:   3'- -UGCA---GCCGCUUCGUcuCuaGCAGCCC- -5'
23686 3' -55.4 NC_005261.1 + 96830 0.74 0.512879
Target:  5'- cUGUCGGCGGugucgaGGCcGGGGUCGaCGGGg -3'
miRNA:   3'- uGCAGCCGCU------UCGuCUCUAGCaGCCC- -5'
23686 3' -55.4 NC_005261.1 + 107565 0.73 0.572253
Target:  5'- cACGgcagCGGCGAAGUAGGGcgCGaaggcCGGGu -3'
miRNA:   3'- -UGCa---GCCGCUUCGUCUCuaGCa----GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.