miRNA display CGI


Results 21 - 40 of 569 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23686 5' -58.4 NC_005261.1 + 123208 0.66 0.796503
Target:  5'- aGCCgCCGcguAAGC-GCGGCCugCCGCcuAGCg -3'
miRNA:   3'- -CGG-GGU---UUUGuCGCCGG--GGCGucUCG- -5'
23686 5' -58.4 NC_005261.1 + 36941 0.66 0.796503
Target:  5'- gGCCCUGcgcuGGCGcaaGGCCCgccgcgcggCGCAGAGCu -3'
miRNA:   3'- -CGGGGUu---UUGUcg-CCGGG---------GCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 43760 0.66 0.796503
Target:  5'- uGCCCCuGAaggugcucguGgGGCGGCgCgCGgAGGGCg -3'
miRNA:   3'- -CGGGGuUU----------UgUCGCCGgG-GCgUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 58942 0.66 0.796503
Target:  5'- cGCCCgGAAGCGcuCGGCCa-GCAGcGCc -3'
miRNA:   3'- -CGGGgUUUUGUc-GCCGGggCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 53519 0.66 0.796503
Target:  5'- cGCCCgAAGGCuGUGGCUgCCGUGuuGCg -3'
miRNA:   3'- -CGGGgUUUUGuCGCCGG-GGCGUcuCG- -5'
23686 5' -58.4 NC_005261.1 + 69174 0.66 0.796503
Target:  5'- cGCCCCuuGACgAG-GGCaCCguCGCGGAcGCg -3'
miRNA:   3'- -CGGGGuuUUG-UCgCCG-GG--GCGUCU-CG- -5'
23686 5' -58.4 NC_005261.1 + 25852 0.66 0.796503
Target:  5'- uGCCCUGAAACAaaaaaaCGGCCagcaaguagCGCGGAGg -3'
miRNA:   3'- -CGGGGUUUUGUc-----GCCGGg--------GCGUCUCg -5'
23686 5' -58.4 NC_005261.1 + 116712 0.66 0.796503
Target:  5'- gGCCgCCAGcuggccGACGucGCcGCCCUGCuGAGCc -3'
miRNA:   3'- -CGG-GGUU------UUGU--CGcCGGGGCGuCUCG- -5'
23686 5' -58.4 NC_005261.1 + 48887 0.66 0.796503
Target:  5'- aGCCgCCGAAcagccGCAGuUGGCCUCuaGCGcGAGCc -3'
miRNA:   3'- -CGG-GGUUU-----UGUC-GCCGGGG--CGU-CUCG- -5'
23686 5' -58.4 NC_005261.1 + 125705 0.66 0.796503
Target:  5'- gGCCC---GGCGaCGGCCgCCGCGG-GCu -3'
miRNA:   3'- -CGGGguuUUGUcGCCGG-GGCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 2524 0.66 0.795608
Target:  5'- aCCUCGGGGCGGCaguaGGCCgccagcgCCGCGGcGCu -3'
miRNA:   3'- cGGGGUUUUGUCG----CCGG-------GGCGUCuCG- -5'
23686 5' -58.4 NC_005261.1 + 18305 0.66 0.795608
Target:  5'- aGCCCaggaaguAGACGuaGGUCCCGCugucguacaggccGGGGCg -3'
miRNA:   3'- -CGGGgu-----UUUGUcgCCGGGGCG-------------UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 105239 0.66 0.795608
Target:  5'- gGCCgUGAucuGCGGCGGCaUCCGCGcgacaggcucggcGGGCg -3'
miRNA:   3'- -CGGgGUUu--UGUCGCCG-GGGCGU-------------CUCG- -5'
23686 5' -58.4 NC_005261.1 + 97938 0.66 0.791111
Target:  5'- gGCCgCCAGcucCGGCGGCaacgagggagguggCgGCGGAGCg -3'
miRNA:   3'- -CGG-GGUUuu-GUCGCCGg-------------GgCGUCUCG- -5'
23686 5' -58.4 NC_005261.1 + 105160 0.66 0.791111
Target:  5'- gGCUCgAGGGCGGCGuccacggggcccgccGCCgCCGCGGcaGGCu -3'
miRNA:   3'- -CGGGgUUUUGUCGC---------------CGG-GGCGUC--UCG- -5'
23686 5' -58.4 NC_005261.1 + 99396 0.66 0.787487
Target:  5'- aCCUCGcug-GGCGGCUgCCGCAcGAGCg -3'
miRNA:   3'- cGGGGUuuugUCGCCGG-GGCGU-CUCG- -5'
23686 5' -58.4 NC_005261.1 + 94693 0.66 0.787487
Target:  5'- gGCCaCCGAGGacGUGGCCgaGCuGGAGCg -3'
miRNA:   3'- -CGG-GGUUUUguCGCCGGggCG-UCUCG- -5'
23686 5' -58.4 NC_005261.1 + 32316 0.66 0.787487
Target:  5'- cGCCgCCGcgGCcGCGGCgCCCgGCGuGGCc -3'
miRNA:   3'- -CGG-GGUuuUGuCGCCG-GGG-CGUcUCG- -5'
23686 5' -58.4 NC_005261.1 + 104426 0.66 0.787487
Target:  5'- cGCCgCAcAGCuugAGCGGgCCCGCGucGCc -3'
miRNA:   3'- -CGGgGUuUUG---UCGCCgGGGCGUcuCG- -5'
23686 5' -58.4 NC_005261.1 + 44676 0.66 0.787487
Target:  5'- cGCCUgGAGAC-GUa-CCUCGCGGAGCu -3'
miRNA:   3'- -CGGGgUUUUGuCGccGGGGCGUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.