miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23688 5' -56.3 NC_005261.1 + 3931 0.68 0.776704
Target:  5'- cGGCCUCCGgGUAGgccaUGggCGCguacgCGCGc -3'
miRNA:   3'- -UCGGAGGCgUAUCa---ACgaGCGa----GCGU- -5'
23688 5' -56.3 NC_005261.1 + 4308 0.69 0.707649
Target:  5'- cGGCCgCCGCGUAGcgcgcgGC-CGcCUCGCGg -3'
miRNA:   3'- -UCGGaGGCGUAUCaa----CGaGC-GAGCGU- -5'
23688 5' -56.3 NC_005261.1 + 7843 0.69 0.71779
Target:  5'- cAGCCUCCGCGcUAcUUGCUgGC-CGUu -3'
miRNA:   3'- -UCGGAGGCGU-AUcAACGAgCGaGCGu -5'
23688 5' -56.3 NC_005261.1 + 10027 0.7 0.656141
Target:  5'- gGGCCUCgCGUcgGGggcGCUCGCUCa-- -3'
miRNA:   3'- -UCGGAG-GCGuaUCaa-CGAGCGAGcgu -5'
23688 5' -56.3 NC_005261.1 + 17234 1.09 0.002168
Target:  5'- cAGCCUCCGCAUAGUUGCUCGCUCGCAg -3'
miRNA:   3'- -UCGGAGGCGUAUCAACGAGCGAGCGU- -5'
23688 5' -56.3 NC_005261.1 + 21851 0.67 0.804485
Target:  5'- cGCC-CCGCAgcuGacGCUCGCgcUCGCGa -3'
miRNA:   3'- uCGGaGGCGUau-CaaCGAGCG--AGCGU- -5'
23688 5' -56.3 NC_005261.1 + 28774 0.67 0.804485
Target:  5'- cGCCUgggCCGCGgcgcGGgcGCUCGCggcCGCGg -3'
miRNA:   3'- uCGGA---GGCGUa---UCaaCGAGCGa--GCGU- -5'
23688 5' -56.3 NC_005261.1 + 33467 0.71 0.593755
Target:  5'- cAGCCgccgCCGCAgccggGCcCGCUCGCGg -3'
miRNA:   3'- -UCGGa---GGCGUaucaaCGaGCGAGCGU- -5'
23688 5' -56.3 NC_005261.1 + 37276 0.73 0.454527
Target:  5'- gAGCCgugCCGCGgcgaccuGUUGCUCGCggaUCGCc -3'
miRNA:   3'- -UCGGa--GGCGUau-----CAACGAGCG---AGCGu -5'
23688 5' -56.3 NC_005261.1 + 43421 0.7 0.635334
Target:  5'- cGGCCUCCGCcgccggcgGGgaGCUgGCUCGg- -3'
miRNA:   3'- -UCGGAGGCGua------UCaaCGAgCGAGCgu -5'
23688 5' -56.3 NC_005261.1 + 46531 0.67 0.795374
Target:  5'- cGCCUCCGC-----UGCgCGCUgGCAg -3'
miRNA:   3'- uCGGAGGCGuaucaACGaGCGAgCGU- -5'
23688 5' -56.3 NC_005261.1 + 54803 0.68 0.757499
Target:  5'- cGCCUCCGCGUAGgccaccagGUcCGCgucauaCGCGg -3'
miRNA:   3'- uCGGAGGCGUAUCaa------CGaGCGa-----GCGU- -5'
23688 5' -56.3 NC_005261.1 + 61204 0.67 0.822212
Target:  5'- cAGCCaggacUCCGC--GGUUGCgaucgCGCUCgGCGu -3'
miRNA:   3'- -UCGG-----AGGCGuaUCAACGa----GCGAG-CGU- -5'
23688 5' -56.3 NC_005261.1 + 72514 0.66 0.854667
Target:  5'- gGGCg-CCGCAUccuccuuGGcgGCUCGCUgCGCGg -3'
miRNA:   3'- -UCGgaGGCGUA-------UCaaCGAGCGA-GCGU- -5'
23688 5' -56.3 NC_005261.1 + 80641 0.66 0.830812
Target:  5'- aAGCgCUCCGgcgaGUAGcuggugUGCUCGCggugCGCGc -3'
miRNA:   3'- -UCG-GAGGCg---UAUCa-----ACGAGCGa---GCGU- -5'
23688 5' -56.3 NC_005261.1 + 81160 0.76 0.334898
Target:  5'- uGcCCUCCGUGUAGUUGCgcccgaGCUCGUAc -3'
miRNA:   3'- uC-GGAGGCGUAUCAACGag----CGAGCGU- -5'
23688 5' -56.3 NC_005261.1 + 82562 0.67 0.822212
Target:  5'- cGGCCgcgcgCCGCAgca--GCUCGCgcagCGCGu -3'
miRNA:   3'- -UCGGa----GGCGUaucaaCGAGCGa---GCGU- -5'
23688 5' -56.3 NC_005261.1 + 91708 0.68 0.776704
Target:  5'- cAGCCggCUGCAaGGccgGCUCGC-CGCGg -3'
miRNA:   3'- -UCGGa-GGCGUaUCaa-CGAGCGaGCGU- -5'
23688 5' -56.3 NC_005261.1 + 96791 0.67 0.78611
Target:  5'- cGCCUCCGUcuccGUcccgGCUCGCUC-CAg -3'
miRNA:   3'- uCGGAGGCGuau-CAa---CGAGCGAGcGU- -5'
23688 5' -56.3 NC_005261.1 + 101043 0.71 0.583414
Target:  5'- cAGCCg-CGCGUAG-UGCUCGUcCGCGc -3'
miRNA:   3'- -UCGGagGCGUAUCaACGAGCGaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.