Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23688 | 5' | -56.3 | NC_005261.1 | + | 109186 | 0.66 | 0.870857 |
Target: 5'- uAGCagcgCCGCGUcGGgcgUGCgcaggCGCUCGUAg -3' miRNA: 3'- -UCGga--GGCGUA-UCa--ACGa----GCGAGCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 91708 | 0.68 | 0.776704 |
Target: 5'- cAGCCggCUGCAaGGccgGCUCGC-CGCGg -3' miRNA: 3'- -UCGGa-GGCGUaUCaa-CGAGCGaGCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 133672 | 0.68 | 0.776704 |
Target: 5'- cGCCUCCgGCGccaacgGCUCGCUcCGCu -3' miRNA: 3'- uCGGAGG-CGUaucaa-CGAGCGA-GCGu -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 135157 | 0.68 | 0.776704 |
Target: 5'- cGCCUCCGCccgcucgaucGGgaGCUCGCU-GCGg -3' miRNA: 3'- uCGGAGGCGua--------UCaaCGAGCGAgCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 3931 | 0.68 | 0.776704 |
Target: 5'- cGGCCUCCGgGUAGgccaUGggCGCguacgCGCGc -3' miRNA: 3'- -UCGGAGGCgUAUCa---ACgaGCGa----GCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 96791 | 0.67 | 0.78611 |
Target: 5'- cGCCUCCGUcuccGUcccgGCUCGCUC-CAg -3' miRNA: 3'- uCGGAGGCGuau-CAa---CGAGCGAGcGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 125999 | 0.67 | 0.78611 |
Target: 5'- uGGCCUCUGgagucguccCGUAGUUGaUCGCgccgCGCGg -3' miRNA: 3'- -UCGGAGGC---------GUAUCAACgAGCGa---GCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 132355 | 0.67 | 0.78611 |
Target: 5'- cAGCUUCCGCcgcGgcGCgcucgccgCGCUCGCGg -3' miRNA: 3'- -UCGGAGGCGuauCaaCGa-------GCGAGCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 46531 | 0.67 | 0.795374 |
Target: 5'- cGCCUCCGC-----UGCgCGCUgGCAg -3' miRNA: 3'- uCGGAGGCGuaucaACGaGCGAgCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 112174 | 0.68 | 0.767164 |
Target: 5'- cGCCggCCGCGcgcGggGCUCGCUgGCc -3' miRNA: 3'- uCGGa-GGCGUau-CaaCGAGCGAgCGu -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 54803 | 0.68 | 0.757499 |
Target: 5'- cGCCUCCGCGUAGgccaccagGUcCGCgucauaCGCGg -3' miRNA: 3'- uCGGAGGCGUAUCaa------CGaGCGa-----GCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 7843 | 0.69 | 0.71779 |
Target: 5'- cAGCCUCCGCGcUAcUUGCUgGC-CGUu -3' miRNA: 3'- -UCGGAGGCGU-AUcAACGAgCGaGCGu -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 81160 | 0.76 | 0.334898 |
Target: 5'- uGcCCUCCGUGUAGUUGCgcccgaGCUCGUAc -3' miRNA: 3'- uC-GGAGGCGUAUCAACGag----CGAGCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 37276 | 0.73 | 0.454527 |
Target: 5'- gAGCCgugCCGCGgcgaccuGUUGCUCGCggaUCGCc -3' miRNA: 3'- -UCGGa--GGCGUau-----CAACGAGCG---AGCGu -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 101043 | 0.71 | 0.583414 |
Target: 5'- cAGCCg-CGCGUAG-UGCUCGUcCGCGc -3' miRNA: 3'- -UCGGagGCGUAUCaACGAGCGaGCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 33467 | 0.71 | 0.593755 |
Target: 5'- cAGCCgccgCCGCAgccggGCcCGCUCGCGg -3' miRNA: 3'- -UCGGa---GGCGUaucaaCGaGCGAGCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 43421 | 0.7 | 0.635334 |
Target: 5'- cGGCCUCCGCcgccggcgGGgaGCUgGCUCGg- -3' miRNA: 3'- -UCGGAGGCGua------UCaaCGAgCGAGCgu -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 10027 | 0.7 | 0.656141 |
Target: 5'- gGGCCUCgCGUcgGGggcGCUCGCUCa-- -3' miRNA: 3'- -UCGGAG-GCGuaUCaa-CGAGCGAGcgu -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 127800 | 0.69 | 0.676867 |
Target: 5'- gGGCCggcgCCGCGgcGgcggGC-CGCUCGCGc -3' miRNA: 3'- -UCGGa---GGCGUauCaa--CGaGCGAGCGU- -5' |
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23688 | 5' | -56.3 | NC_005261.1 | + | 4308 | 0.69 | 0.707649 |
Target: 5'- cGGCCgCCGCGUAGcgcgcgGC-CGcCUCGCGg -3' miRNA: 3'- -UCGGaGGCGUAUCaa----CGaGC-GAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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