miRNA display CGI


Results 61 - 80 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 35791 0.67 0.993564
Target:  5'- cCGCGGGcGCCAuggcgcggGACGGCCUGGa- -3'
miRNA:   3'- -GCGCUU-UGGUuaaa----UUGUCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 67000 0.67 0.993469
Target:  5'- gCGCGGuggcaGGCCAccucgauGUUUGACAGgaCCUGGCc -3'
miRNA:   3'- -GCGCU-----UUGGU-------UAAAUUGUC--GGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 71421 0.67 0.993469
Target:  5'- gCGCGggGCC-------CGGCCCGGg- -3'
miRNA:   3'- -GCGCuuUGGuuaaauuGUCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 35918 0.67 0.993372
Target:  5'- aGCGcgGCCccgcgccGCAGCCCaGCGg -3'
miRNA:   3'- gCGCuuUGGuuaaau-UGUCGGGcCGC- -5'
23691 3' -49.7 NC_005261.1 + 106080 0.67 0.993275
Target:  5'- uGCGGAACCccac-AGCGGCgaucgcgacgucggCCGGCGu -3'
miRNA:   3'- gCGCUUUGGuuaaaUUGUCG--------------GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 112625 0.67 0.992559
Target:  5'- uCGCaccucAGCCGGcUgcACGGCCCGGCc -3'
miRNA:   3'- -GCGcu---UUGGUUaAauUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 66091 0.67 0.992559
Target:  5'- aUGCGcgGCCAcgUcaucCAGCCCGcGCa -3'
miRNA:   3'- -GCGCuuUGGUuaAauu-GUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 133217 0.67 0.992559
Target:  5'- cCGuCGAGGCCGAgcu-GgGGCCCuacauGGCGg -3'
miRNA:   3'- -GC-GCUUUGGUUaaauUgUCGGG-----CCGC- -5'
23691 3' -49.7 NC_005261.1 + 102546 0.67 0.992559
Target:  5'- uGCGGccCCAG----GC-GCCCGGCGg -3'
miRNA:   3'- gCGCUuuGGUUaaauUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 29688 0.67 0.992559
Target:  5'- gGCGcuGCCGcacgUGGCGGCCUGcGUGg -3'
miRNA:   3'- gCGCuuUGGUuaa-AUUGUCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 28563 0.67 0.992452
Target:  5'- aCGCGGcccgccgGGCCGAggcgcGCgAGCgCCGGCGg -3'
miRNA:   3'- -GCGCU-------UUGGUUaaau-UG-UCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 59411 0.67 0.992343
Target:  5'- uCGcCGgcGCCGGcgcugucgcGCGGCCCGGCa -3'
miRNA:   3'- -GC-GCuuUGGUUaaau-----UGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 117169 0.67 0.991432
Target:  5'- gGCGGucGCCAAg--GAC--CCCGGCGg -3'
miRNA:   3'- gCGCUu-UGGUUaaaUUGucGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 102299 0.67 0.991432
Target:  5'- cCGCGGgucguAGCCGcgcgccGCGGCCgCGGCGc -3'
miRNA:   3'- -GCGCU-----UUGGUuaaau-UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 87632 0.67 0.991432
Target:  5'- gCGCGAAcgccGCCuccacgGugAGCCCGcGCa -3'
miRNA:   3'- -GCGCUU----UGGuuaaa-UugUCGGGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 81211 0.67 0.991432
Target:  5'- gCGCGAgccgGACCAccgUGGC-GCCCgagGGCGg -3'
miRNA:   3'- -GCGCU----UUGGUuaaAUUGuCGGG---CCGC- -5'
23691 3' -49.7 NC_005261.1 + 52965 0.67 0.991432
Target:  5'- aGCGccgcGCCGGU---GCGGCgCCGGCa -3'
miRNA:   3'- gCGCuu--UGGUUAaauUGUCG-GGCCGc -5'
23691 3' -49.7 NC_005261.1 + 230 0.67 0.991432
Target:  5'- uCGCG-GGCCccgcgAGCgGGCCCGGCu -3'
miRNA:   3'- -GCGCuUUGGuuaaaUUG-UCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 104532 0.67 0.991432
Target:  5'- gGCGGccgccACCAGgc--GCAGCuuGGCGu -3'
miRNA:   3'- gCGCUu----UGGUUaaauUGUCGggCCGC- -5'
23691 3' -49.7 NC_005261.1 + 137913 0.67 0.991432
Target:  5'- uCGCG-GGCCccgcgAGCgGGCCCGGCu -3'
miRNA:   3'- -GCGCuUUGGuuaaaUUG-UCGGGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.