miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 98270 0.66 0.995247
Target:  5'- gGCGgcGCgCGcgUUcGAC-GCCCGGCGc -3'
miRNA:   3'- gCGCuuUG-GUuaAA-UUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 1046 0.66 0.995247
Target:  5'- gGCGGgcGGCgGcgUUAGCGGCgCGGgGg -3'
miRNA:   3'- gCGCU--UUGgUuaAAUUGUCGgGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 101363 0.66 0.995247
Target:  5'- cCGCG--GCCAcgUc--CAGCuCCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaAauuGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 77235 0.66 0.995247
Target:  5'- --aGGAGCCAGagc-GCAGCCgGGCu -3'
miRNA:   3'- gcgCUUUGGUUaaauUGUCGGgCCGc -5'
23691 3' -49.7 NC_005261.1 + 47126 0.66 0.994943
Target:  5'- gCGCGu--CCAGgucgucgcgcACAGCgCCGGCGu -3'
miRNA:   3'- -GCGCuuuGGUUaaau------UGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 31631 0.67 0.994785
Target:  5'- aCGCGGGACCuggccuuccGCGGCgCGGuCGa -3'
miRNA:   3'- -GCGCUUUGGuuaaau---UGUCGgGCC-GC- -5'
23691 3' -49.7 NC_005261.1 + 109256 0.67 0.994541
Target:  5'- uGCGggGCCAcgaaguccagcgAGCugAGCCCGGaCGc -3'
miRNA:   3'- gCGCuuUGGUuaaa--------UUG--UCGGGCC-GC- -5'
23691 3' -49.7 NC_005261.1 + 5418 0.67 0.994457
Target:  5'- cCGCGAacgaaggagacGACC------GCGGCCgCGGCGg -3'
miRNA:   3'- -GCGCU-----------UUGGuuaaauUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 1876 0.67 0.994457
Target:  5'- cCGCGAGGCCAGc---ACGGCgCGcGCc -3'
miRNA:   3'- -GCGCUUUGGUUaaauUGUCGgGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 86340 0.67 0.994457
Target:  5'- gCGCGu--CCAugucguuGC-GCCCGGCGa -3'
miRNA:   3'- -GCGCuuuGGUuaaau--UGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 96959 0.67 0.994457
Target:  5'- gGCGggGCagccgccgggcgCGAUUcacGCGGCCuCGGCGc -3'
miRNA:   3'- gCGCuuUG------------GUUAAau-UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 28782 0.67 0.994457
Target:  5'- cCGCGgcGCgGGcgcucGCGGCCgCGGCGg -3'
miRNA:   3'- -GCGCuuUGgUUaaau-UGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 59593 0.67 0.994287
Target:  5'- cCGCGccGCCAccaccuccGCGGCgCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUuaaau---UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 35791 0.67 0.993564
Target:  5'- cCGCGGGcGCCAuggcgcggGACGGCCUGGa- -3'
miRNA:   3'- -GCGCUU-UGGUuaaa----UUGUCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 31084 0.67 0.993564
Target:  5'- cCGCGugcuGGGCCccau--GCcGCCCGGCGg -3'
miRNA:   3'- -GCGC----UUUGGuuaaauUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 117695 0.67 0.993564
Target:  5'- gGCGAGGCCGGcccug-AGgCCGGCGc -3'
miRNA:   3'- gCGCUUUGGUUaaauugUCgGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 90775 0.67 0.993564
Target:  5'- cCGcCGAGGCCGcu---GCGGCggCCGGCGc -3'
miRNA:   3'- -GC-GCUUUGGUuaaauUGUCG--GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 106725 0.67 0.993564
Target:  5'- aGCGGcccACCucgu--GCAGCCCcGGCGc -3'
miRNA:   3'- gCGCUu--UGGuuaaauUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 50556 0.67 0.993564
Target:  5'- gCGCGcGGACCAcggucACGcGCCUGGCGu -3'
miRNA:   3'- -GCGC-UUUGGUuaaauUGU-CGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 67887 0.67 0.993564
Target:  5'- gCGCGGGuaagcGCCGcAUUUAACccggcGCCCGGgGc -3'
miRNA:   3'- -GCGCUU-----UGGU-UAAAUUGu----CGGGCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.