miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 115613 0.66 0.996554
Target:  5'- aGCGAGGCCAGcacgucgcGGCAGCgCaGCGu -3'
miRNA:   3'- gCGCUUUGGUUaaa-----UUGUCGgGcCGC- -5'
23691 3' -49.7 NC_005261.1 + 47697 0.66 0.996554
Target:  5'- cCGCGgcGCCGcgUcGGCGGCgUCGGgGg -3'
miRNA:   3'- -GCGCuuUGGUuaAaUUGUCG-GGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 73370 0.66 0.996554
Target:  5'- gGCGgcGCCA-----GCAGCgCGGCc -3'
miRNA:   3'- gCGCuuUGGUuaaauUGUCGgGCCGc -5'
23691 3' -49.7 NC_005261.1 + 81788 0.66 0.996554
Target:  5'- uCGCGGAuauauuGCCAAgcgAGCcgcuGCgCGGCGg -3'
miRNA:   3'- -GCGCUU------UGGUUaaaUUGu---CGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 58344 0.66 0.996438
Target:  5'- uCGCGGAGCCGcgccggcCAGUCCaGGUGu -3'
miRNA:   3'- -GCGCUUUGGUuaaauu-GUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 82001 0.66 0.995944
Target:  5'- gCGCGcuGCCGucgaagAGCGGCCCGuuGa -3'
miRNA:   3'- -GCGCuuUGGUuaaa--UUGUCGGGCcgC- -5'
23691 3' -49.7 NC_005261.1 + 32365 0.66 0.995944
Target:  5'- cCGCGGGagacGCUggUgcaggcGCGGCgCGGCGg -3'
miRNA:   3'- -GCGCUU----UGGuuAaau---UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 11900 0.66 0.995944
Target:  5'- gCGCGcccGCCGcgggccCGGCCCGGCc -3'
miRNA:   3'- -GCGCuu-UGGUuaaauuGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 65394 0.66 0.995944
Target:  5'- uGCG--GCgGGUUgGGCGGcCCCGGCa -3'
miRNA:   3'- gCGCuuUGgUUAAaUUGUC-GGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 90073 0.66 0.995944
Target:  5'- cCGCGGGcGCCGAg--GGCAGCgaCGGgGg -3'
miRNA:   3'- -GCGCUU-UGGUUaaaUUGUCGg-GCCgC- -5'
23691 3' -49.7 NC_005261.1 + 16077 0.66 0.995944
Target:  5'- gCGCGuguAGACgAAguacgcGGCGGCaCCGGCGg -3'
miRNA:   3'- -GCGC---UUUGgUUaaa---UUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 127838 0.66 0.995944
Target:  5'- cCGCGAgcAGCgGAcggGGCGGUCgCGGCGc -3'
miRNA:   3'- -GCGCU--UUGgUUaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 48301 0.66 0.995944
Target:  5'- aGCGAGGCCucggggGGCgcgucgGGCCCGGg- -3'
miRNA:   3'- gCGCUUUGGuuaaa-UUG------UCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 94240 0.66 0.995944
Target:  5'- gGCGGcGACCAc---GAUGGCCaCGGCGc -3'
miRNA:   3'- gCGCU-UUGGUuaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 107966 0.66 0.995944
Target:  5'- cCGCGggGCCAu----GCAGU--GGCGg -3'
miRNA:   3'- -GCGCuuUGGUuaaauUGUCGggCCGC- -5'
23691 3' -49.7 NC_005261.1 + 59118 0.66 0.995878
Target:  5'- gCGCGAGcuccccgGCCAccgacuCAGgCCGGCGc -3'
miRNA:   3'- -GCGCUU-------UGGUuaaauuGUCgGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 3529 0.66 0.995676
Target:  5'- gCGCGGcGGCCGccucggcgcGCAGCgCGGCGg -3'
miRNA:   3'- -GCGCU-UUGGUuaaau----UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 34309 0.66 0.995676
Target:  5'- aGCGAGACCGAcggggaggccgAGgGGCCCcaaggggccggGGCGg -3'
miRNA:   3'- gCGCUUUGGUUaaa--------UUgUCGGG-----------CCGC- -5'
23691 3' -49.7 NC_005261.1 + 18633 0.66 0.995247
Target:  5'- cCGCGAGGCCAGguccaaGGCUCccaggucucgGGCGg -3'
miRNA:   3'- -GCGCUUUGGUUaaauugUCGGG----------CCGC- -5'
23691 3' -49.7 NC_005261.1 + 1046 0.66 0.995247
Target:  5'- gGCGGgcGGCgGcgUUAGCGGCgCGGgGg -3'
miRNA:   3'- gCGCU--UUGgUuaAAUUGUCGgGCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.