miRNA display CGI


Results 21 - 40 of 234 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 13434 0.72 0.912208
Target:  5'- gCGCGucGACCGGgugcaGGCAGgCCGGCGc -3'
miRNA:   3'- -GCGCu-UUGGUUaaa--UUGUCgGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 13864 0.69 0.974278
Target:  5'- gGCGucGCCG-----GCGGCCCGGUc -3'
miRNA:   3'- gCGCuuUGGUuaaauUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 14038 0.72 0.89235
Target:  5'- aGCGggGCCAugcgAGCGGUCCgcaGGCa -3'
miRNA:   3'- gCGCuuUGGUuaaaUUGUCGGG---CCGc -5'
23691 3' -49.7 NC_005261.1 + 14510 1.11 0.008186
Target:  5'- gCGCGAAACCAAUUUAACAGCCCGGCGg -3'
miRNA:   3'- -GCGCUUUGGUUAAAUUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 15346 0.68 0.985526
Target:  5'- aCGCG--GCCAGgggaaaGACGuCCCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUUaaa---UUGUcGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 16077 0.66 0.995944
Target:  5'- gCGCGuguAGACgAAguacgcGGCGGCaCCGGCGg -3'
miRNA:   3'- -GCGC---UUUGgUUaaa---UUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 16264 0.66 0.997087
Target:  5'- cCGcCGggGCCGGgcuucGGCucGCCCGGgGg -3'
miRNA:   3'- -GC-GCuuUGGUUaaa--UUGu-CGGGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 17294 0.69 0.979357
Target:  5'- cCGaCGAGgcuauauacccgGCCGGggUcGCGGCCCGGCc -3'
miRNA:   3'- -GC-GCUU------------UGGUUaaAuUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 17646 0.74 0.837499
Target:  5'- uCGCGAGGCCGAUgaggaUGGCGcGCCgcgUGGCGg -3'
miRNA:   3'- -GCGCUUUGGUUAa----AUUGU-CGG---GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 18633 0.66 0.995247
Target:  5'- cCGCGAGGCCAGguccaaGGCUCccaggucucgGGCGg -3'
miRNA:   3'- -GCGCUUUGGUUaaauugUCGGG----------CCGC- -5'
23691 3' -49.7 NC_005261.1 + 18766 0.68 0.987232
Target:  5'- aGCaGGGCCAGggcAACAGCagCGGCGa -3'
miRNA:   3'- gCGcUUUGGUUaaaUUGUCGg-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 19395 0.69 0.97692
Target:  5'- aGCGggGCuCGGUgau-CGGCCCGuGUGc -3'
miRNA:   3'- gCGCuuUG-GUUAaauuGUCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 19518 0.7 0.960765
Target:  5'- aCGCGAGGCCccgcagcACGGCCC-GCGu -3'
miRNA:   3'- -GCGCUUUGGuuaaau-UGUCGGGcCGC- -5'
23691 3' -49.7 NC_005261.1 + 20482 0.69 0.968346
Target:  5'- uGCGGAgcaaaGCCGAgcgcUGACAGCgggCCGGCu -3'
miRNA:   3'- gCGCUU-----UGGUUaa--AUUGUCG---GGCCGc -5'
23691 3' -49.7 NC_005261.1 + 22682 0.73 0.87785
Target:  5'- aGUGccGCCGGgg-GACgGGCCCGGCGa -3'
miRNA:   3'- gCGCuuUGGUUaaaUUG-UCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 22786 0.66 0.996554
Target:  5'- cCGCGAGAagggGGUUgucGCGGCCggCGGCGg -3'
miRNA:   3'- -GCGCUUUgg--UUAAau-UGUCGG--GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 23225 0.72 0.905845
Target:  5'- gCGCGcaaAAGCCGGUgcAGCGGgCCGGCc -3'
miRNA:   3'- -GCGC---UUUGGUUAaaUUGUCgGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 27253 0.74 0.810764
Target:  5'- gGUGggGCgGGgugugcgGGCAGCCCGGCc -3'
miRNA:   3'- gCGCuuUGgUUaaa----UUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 28442 0.68 0.981598
Target:  5'- cCGCGGccGGCCA---UGGCGucuCCCGGCGg -3'
miRNA:   3'- -GCGCU--UUGGUuaaAUUGUc--GGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 28563 0.67 0.992452
Target:  5'- aCGCGGcccgccgGGCCGAggcgcGCgAGCgCCGGCGg -3'
miRNA:   3'- -GCGCU-------UUGGUUaaau-UG-UCG-GGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.