miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 94240 0.66 0.995944
Target:  5'- gGCGGcGACCAc---GAUGGCCaCGGCGc -3'
miRNA:   3'- gCGCU-UUGGUuaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 32365 0.66 0.995944
Target:  5'- cCGCGGGagacGCUggUgcaggcGCGGCgCGGCGg -3'
miRNA:   3'- -GCGCUU----UGGuuAaau---UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 101488 0.66 0.996554
Target:  5'- aUGCGcAGCagguucuugaGGUUggcCAGCCCGGCGc -3'
miRNA:   3'- -GCGCuUUGg---------UUAAauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 3529 0.66 0.995676
Target:  5'- gCGCGGcGGCCGccucggcgcGCAGCgCGGCGg -3'
miRNA:   3'- -GCGCU-UUGGUuaaau----UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 65394 0.66 0.995944
Target:  5'- uGCG--GCgGGUUgGGCGGcCCCGGCa -3'
miRNA:   3'- gCGCuuUGgUUAAaUUGUC-GGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 16264 0.66 0.997087
Target:  5'- cCGcCGggGCCGGgcuucGGCucGCCCGGgGg -3'
miRNA:   3'- -GC-GCuuUGGUUaaa--UUGu-CGGGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 47600 0.66 0.996776
Target:  5'- gCGCGAgggAGCCGcccccugcgggGGCGGCCgCGGCc -3'
miRNA:   3'- -GCGCU---UUGGUuaaa-------UUGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 59118 0.66 0.995878
Target:  5'- gCGCGAGcuccccgGCCAccgacuCAGgCCGGCGc -3'
miRNA:   3'- -GCGCUU-------UGGUuaaauuGUCgGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 22786 0.66 0.996554
Target:  5'- cCGCGAGAagggGGUUgucGCGGCCggCGGCGg -3'
miRNA:   3'- -GCGCUUUgg--UUAAau-UGUCGG--GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 48301 0.66 0.995944
Target:  5'- aGCGAGGCCucggggGGCgcgucgGGCCCGGg- -3'
miRNA:   3'- gCGCUUUGGuuaaa-UUG------UCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 101363 0.66 0.995247
Target:  5'- cCGCG--GCCAcgUc--CAGCuCCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaAauuGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 119586 0.66 0.997087
Target:  5'- gCGCGAGACCG---UGGCcGCCCcGUa -3'
miRNA:   3'- -GCGCUUUGGUuaaAUUGuCGGGcCGc -5'
23691 3' -49.7 NC_005261.1 + 82001 0.66 0.995944
Target:  5'- gCGCGcuGCCGucgaagAGCGGCCCGuuGa -3'
miRNA:   3'- -GCGCuuUGGUuaaa--UUGUCGGGCcgC- -5'
23691 3' -49.7 NC_005261.1 + 81788 0.66 0.996554
Target:  5'- uCGCGGAuauauuGCCAAgcgAGCcgcuGCgCGGCGg -3'
miRNA:   3'- -GCGCUU------UGGUUaaaUUGu---CGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 107966 0.66 0.995944
Target:  5'- cCGCGggGCCAu----GCAGU--GGCGg -3'
miRNA:   3'- -GCGCuuUGGUuaaauUGUCGggCCGC- -5'
23691 3' -49.7 NC_005261.1 + 34309 0.66 0.995676
Target:  5'- aGCGAGACCGAcggggaggccgAGgGGCCCcaaggggccggGGCGg -3'
miRNA:   3'- gCGCUUUGGUUaaa--------UUgUCGGG-----------CCGC- -5'
23691 3' -49.7 NC_005261.1 + 90073 0.66 0.995944
Target:  5'- cCGCGGGcGCCGAg--GGCAGCgaCGGgGg -3'
miRNA:   3'- -GCGCUU-UGGUUaaaUUGUCGg-GCCgC- -5'
23691 3' -49.7 NC_005261.1 + 122370 0.66 0.997087
Target:  5'- uCGCGcgGCCccacc-GCGGCCUGGgGg -3'
miRNA:   3'- -GCGCuuUGGuuaaauUGUCGGGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 37256 0.66 0.996986
Target:  5'- gCGCgGAGACCAuccuggccgAGCcguGCCgCGGCGa -3'
miRNA:   3'- -GCG-CUUUGGUuaaa-----UUGu--CGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 121061 0.66 0.996554
Target:  5'- uGUGgcGCgCGGUgugcGCGGCgCCGGCGg -3'
miRNA:   3'- gCGCuuUG-GUUAaau-UGUCG-GGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.