miRNA display CGI


Results 1 - 20 of 234 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 125827 0.65 0.997506
Target:  5'- aGCGggGCCGGaccgggcUUUGcaAGCCCagccaaGGCGg -3'
miRNA:   3'- gCGCuuUGGUU-------AAAUugUCGGG------CCGC- -5'
23691 3' -49.7 NC_005261.1 + 77235 0.66 0.995247
Target:  5'- --aGGAGCCAGagc-GCAGCCgGGCu -3'
miRNA:   3'- gcgCUUUGGUUaaauUGUCGGgCCGc -5'
23691 3' -49.7 NC_005261.1 + 127838 0.66 0.995944
Target:  5'- cCGCGAgcAGCgGAcggGGCGGUCgCGGCGc -3'
miRNA:   3'- -GCGCU--UUGgUUaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 101363 0.66 0.995247
Target:  5'- cCGCG--GCCAcgUc--CAGCuCCGGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaAauuGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 34309 0.66 0.995676
Target:  5'- aGCGAGACCGAcggggaggccgAGgGGCCCcaaggggccggGGCGg -3'
miRNA:   3'- gCGCUUUGGUUaaa--------UUgUCGGG-----------CCGC- -5'
23691 3' -49.7 NC_005261.1 + 48301 0.66 0.995944
Target:  5'- aGCGAGGCCucggggGGCgcgucgGGCCCGGg- -3'
miRNA:   3'- gCGCUUUGGuuaaa-UUG------UCGGGCCgc -5'
23691 3' -49.7 NC_005261.1 + 47126 0.66 0.994943
Target:  5'- gCGCGu--CCAGgucgucgcgcACAGCgCCGGCGu -3'
miRNA:   3'- -GCGCuuuGGUUaaau------UGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 98270 0.66 0.995247
Target:  5'- gGCGgcGCgCGcgUUcGAC-GCCCGGCGc -3'
miRNA:   3'- gCGCuuUG-GUuaAA-UUGuCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 11900 0.66 0.995944
Target:  5'- gCGCGcccGCCGcgggccCGGCCCGGCc -3'
miRNA:   3'- -GCGCuu-UGGUuaaauuGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 94240 0.66 0.995944
Target:  5'- gGCGGcGACCAc---GAUGGCCaCGGCGc -3'
miRNA:   3'- gCGCU-UUGGUuaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 18633 0.66 0.995247
Target:  5'- cCGCGAGGCCAGguccaaGGCUCccaggucucgGGCGg -3'
miRNA:   3'- -GCGCUUUGGUUaaauugUCGGG----------CCGC- -5'
23691 3' -49.7 NC_005261.1 + 1046 0.66 0.995247
Target:  5'- gGCGGgcGGCgGcgUUAGCGGCgCGGgGg -3'
miRNA:   3'- gCGCU--UUGgUuaAAUUGUCGgGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 107966 0.66 0.995944
Target:  5'- cCGCGggGCCAu----GCAGU--GGCGg -3'
miRNA:   3'- -GCGCuuUGGUuaaauUGUCGggCCGC- -5'
23691 3' -49.7 NC_005261.1 + 32365 0.66 0.995944
Target:  5'- cCGCGGGagacGCUggUgcaggcGCGGCgCGGCGg -3'
miRNA:   3'- -GCGCUU----UGGuuAaau---UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 65394 0.66 0.995944
Target:  5'- uGCG--GCgGGUUgGGCGGcCCCGGCa -3'
miRNA:   3'- gCGCuuUGgUUAAaUUGUC-GGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 3529 0.66 0.995676
Target:  5'- gCGCGGcGGCCGccucggcgcGCAGCgCGGCGg -3'
miRNA:   3'- -GCGCU-UUGGUuaaau----UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 82001 0.66 0.995944
Target:  5'- gCGCGcuGCCGucgaagAGCGGCCCGuuGa -3'
miRNA:   3'- -GCGCuuUGGUuaaa--UUGUCGGGCcgC- -5'
23691 3' -49.7 NC_005261.1 + 59118 0.66 0.995878
Target:  5'- gCGCGAGcuccccgGCCAccgacuCAGgCCGGCGc -3'
miRNA:   3'- -GCGCUU-------UGGUuaaauuGUCgGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 90073 0.66 0.995944
Target:  5'- cCGCGGGcGCCGAg--GGCAGCgaCGGgGg -3'
miRNA:   3'- -GCGCUU-UGGUUaaaUUGUCGg-GCCgC- -5'
23691 3' -49.7 NC_005261.1 + 16077 0.66 0.995944
Target:  5'- gCGCGuguAGACgAAguacgcGGCGGCaCCGGCGg -3'
miRNA:   3'- -GCGC---UUUGgUUaaa---UUGUCG-GGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.