miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 14510 1.11 0.008186
Target:  5'- gCGCGAAACCAAUUUAACAGCCCGGCGg -3'
miRNA:   3'- -GCGCUUUGGUUAAAUUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 33588 0.81 0.490196
Target:  5'- cCGCGAGcACCAGg--GGCGGCgCCGGCGc -3'
miRNA:   3'- -GCGCUU-UGGUUaaaUUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 124069 0.77 0.658572
Target:  5'- aGCucGGCCGAcu--GCAGCCCGGCGc -3'
miRNA:   3'- gCGcuUUGGUUaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 106625 0.77 0.658572
Target:  5'- cCGCGGAGCCGcgc-GACgAGCUCGGCGa -3'
miRNA:   3'- -GCGCUUUGGUuaaaUUG-UCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 46500 0.77 0.700053
Target:  5'- cCGCGggGC-------GCAGCCCGGCGu -3'
miRNA:   3'- -GCGCuuUGguuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 29160 0.77 0.701107
Target:  5'- cCGCGGAuccaGCCAAggccAgGGCCCGGCGc -3'
miRNA:   3'- -GCGCUU----UGGUUaaauUgUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 42656 0.77 0.701107
Target:  5'- gCGCGGAACCAGccaagcGGCGGCCgGGCc -3'
miRNA:   3'- -GCGCUUUGGUUaaa---UUGUCGGgCCGc -5'
23691 3' -49.7 NC_005261.1 + 103086 0.76 0.711606
Target:  5'- cCGCGAAgGCCGGgcc--CAGCCCGGCc -3'
miRNA:   3'- -GCGCUU-UGGUUaaauuGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 98232 0.76 0.752755
Target:  5'- gGCGGGcAUCGAUUUccGCGGCCCGGUGc -3'
miRNA:   3'- gCGCUU-UGGUUAAAu-UGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 38918 0.75 0.771688
Target:  5'- gCGCGGGcccgcgcGCCAAgccGGCGGCCgGGCGg -3'
miRNA:   3'- -GCGCUU-------UGGUUaaaUUGUCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 2984 0.75 0.772671
Target:  5'- gGCuGggGCuCGGccUGGCGGCCCGGCGc -3'
miRNA:   3'- gCG-CuuUG-GUUaaAUUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 126794 0.75 0.801484
Target:  5'- uGCGucuGCCGAg--AGCAGCgCGGCGu -3'
miRNA:   3'- gCGCuu-UGGUUaaaUUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 129745 0.74 0.807073
Target:  5'- gGCGggGCCcggccuuCAGCaCCGGCGa -3'
miRNA:   3'- gCGCuuUGGuuaaauuGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 27253 0.74 0.810764
Target:  5'- gGUGggGCgGGgugugcgGGCAGCCCGGCc -3'
miRNA:   3'- gCGCuuUGgUUaaa----UUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 12990 0.74 0.810764
Target:  5'- cCGCGAcGCCGAUUaGGCccgcgAGCCCGaGCGc -3'
miRNA:   3'- -GCGCUuUGGUUAAaUUG-----UCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 28821 0.74 0.810764
Target:  5'- cCGcCGAAGCCGA---GGCGGCCgCGGCu -3'
miRNA:   3'- -GC-GCUUUGGUUaaaUUGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 43298 0.74 0.828781
Target:  5'- cCGCGGGgggcGCCG-----GCAGCCCGGCc -3'
miRNA:   3'- -GCGCUU----UGGUuaaauUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 98116 0.74 0.828781
Target:  5'- gGCGAGGCUGGggacgccGCGGCaCCGGCGg -3'
miRNA:   3'- gCGCUUUGGUUaaau---UGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 17646 0.74 0.837499
Target:  5'- uCGCGAGGCCGAUgaggaUGGCGcGCCgcgUGGCGg -3'
miRNA:   3'- -GCGCUUUGGUUAa----AUUGU-CGG---GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 42099 0.74 0.837499
Target:  5'- cCGCGGugaggauguGCCGGcccAGCAGCCCGGCc -3'
miRNA:   3'- -GCGCUu--------UGGUUaaaUUGUCGGGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.