miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 59463 0.73 0.85431
Target:  5'- cCGCGGcgUCGGgg-GGCAGCgCCGGCGc -3'
miRNA:   3'- -GCGCUuuGGUUaaaUUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 56145 0.73 0.85431
Target:  5'- gCGCG-GGCCGAgggUGGCGGCagCGGCGg -3'
miRNA:   3'- -GCGCuUUGGUUaa-AUUGUCGg-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 40251 0.73 0.85431
Target:  5'- cCGUGAGcGCCAuggcGGCGGCCgCGGCGg -3'
miRNA:   3'- -GCGCUU-UGGUuaaaUUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 31725 0.73 0.862387
Target:  5'- cCGCGAAcugGCCGcgc-GAUGGCCCGGCc -3'
miRNA:   3'- -GCGCUU---UGGUuaaaUUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 56341 0.73 0.862387
Target:  5'- gCGcCGAGGCCGggUUAAauacCGGCaCCGGCGa -3'
miRNA:   3'- -GC-GCUUUGGUuaAAUU----GUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 118045 0.73 0.87785
Target:  5'- cCGCGAcGCCcgcgcUGGCGGCCgCGGCa -3'
miRNA:   3'- -GCGCUuUGGuuaa-AUUGUCGG-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 22682 0.73 0.87785
Target:  5'- aGUGccGCCGGgg-GACgGGCCCGGCGa -3'
miRNA:   3'- gCGCuuUGGUUaaaUUG-UCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 138014 0.73 0.87785
Target:  5'- gGCGGcccgcAGCCcggc--GCGGCCCGGCGg -3'
miRNA:   3'- gCGCU-----UUGGuuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 343 0.73 0.87785
Target:  5'- gGCGGcccgcAGCCcggc--GCGGCCCGGCGg -3'
miRNA:   3'- gCGCU-----UUGGuuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 103678 0.72 0.890238
Target:  5'- cCGCGAGGCCGAgcgcccguuuaUAGCGGCCacgucacccagcaCGGCGu -3'
miRNA:   3'- -GCGCUUUGGUUaa---------AUUGUCGG-------------GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 134937 0.72 0.89235
Target:  5'- cCGCGGAggacgaGCCGAUgggcGAgGGCgCCGGCGa -3'
miRNA:   3'- -GCGCUU------UGGUUAaa--UUgUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 88181 0.72 0.89235
Target:  5'- gGCGAcGCCG-----GCGGCgCCGGCGa -3'
miRNA:   3'- gCGCUuUGGUuaaauUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 39377 0.72 0.89235
Target:  5'- gGCG--GCCGGggagGGCGGCCCuGGCGg -3'
miRNA:   3'- gCGCuuUGGUUaaa-UUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 34932 0.72 0.89235
Target:  5'- aCGCGGggggcGGCCGGcgcGACccgGGCCCGGCGg -3'
miRNA:   3'- -GCGCU-----UUGGUUaaaUUG---UCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 12727 0.72 0.89235
Target:  5'- gCGCGGGcccGCCGGcccccugGGCgGGCCCGGCGa -3'
miRNA:   3'- -GCGCUU---UGGUUaaa----UUG-UCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 100684 0.72 0.89235
Target:  5'- gCGCGAGugCAcc---GCGGCCgCGGCGc -3'
miRNA:   3'- -GCGCUUugGUuaaauUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 14038 0.72 0.89235
Target:  5'- aGCGggGCCAugcgAGCGGUCCgcaGGCa -3'
miRNA:   3'- gCGCuuUGGUuaaaUUGUCGGG---CCGc -5'
23691 3' -49.7 NC_005261.1 + 94026 0.72 0.899225
Target:  5'- aGCGc-ACCuucucGGCGGCCCGGCGc -3'
miRNA:   3'- gCGCuuUGGuuaaaUUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 137092 0.72 0.899225
Target:  5'- gCGCaGGAGCUAGUgggAGCGGaCCCGcGCGg -3'
miRNA:   3'- -GCG-CUUUGGUUAaa-UUGUC-GGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 50976 0.72 0.905845
Target:  5'- gCGCGAAACCucu----CGGCCgaCGGCGg -3'
miRNA:   3'- -GCGCUUUGGuuaaauuGUCGG--GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.