miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 230 0.67 0.991432
Target:  5'- uCGCG-GGCCccgcgAGCgGGCCCGGCu -3'
miRNA:   3'- -GCGCuUUGGuuaaaUUG-UCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 343 0.73 0.87785
Target:  5'- gGCGGcccgcAGCCcggc--GCGGCCCGGCGg -3'
miRNA:   3'- gCGCU-----UUGGuuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 1046 0.66 0.995247
Target:  5'- gGCGGgcGGCgGcgUUAGCGGCgCGGgGg -3'
miRNA:   3'- gCGCU--UUGgUuaAAUUGUCGgGCCgC- -5'
23691 3' -49.7 NC_005261.1 + 1575 0.67 0.990176
Target:  5'- gCGCGccGAGCCcccagcggUUGGCGGCgCGGUGg -3'
miRNA:   3'- -GCGC--UUUGGuua-----AAUUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 1876 0.67 0.994457
Target:  5'- cCGCGAGGCCAGc---ACGGCgCGcGCc -3'
miRNA:   3'- -GCGCUUUGGUUaaauUGUCGgGC-CGc -5'
23691 3' -49.7 NC_005261.1 + 2984 0.75 0.772671
Target:  5'- gGCuGggGCuCGGccUGGCGGCCCGGCGc -3'
miRNA:   3'- gCG-CuuUG-GUUaaAUUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 3529 0.66 0.995676
Target:  5'- gCGCGGcGGCCGccucggcgcGCAGCgCGGCGg -3'
miRNA:   3'- -GCGCU-UUGGUuaaau----UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 3829 0.67 0.990176
Target:  5'- cCGCGGGcCCGGgcgcUGGCGGCagCGGCGc -3'
miRNA:   3'- -GCGCUUuGGUUaa--AUUGUCGg-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 3865 0.7 0.949855
Target:  5'- cCGCGcgGCCGGcgagcacggcgcGCAGCUCGGCGa -3'
miRNA:   3'- -GCGCuuUGGUUaaau--------UGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 4377 0.71 0.944883
Target:  5'- cCGCGccGCCGAagcgcacGCGGCCgGGCGg -3'
miRNA:   3'- -GCGCuuUGGUUaaau---UGUCGGgCCGC- -5'
23691 3' -49.7 NC_005261.1 + 4935 0.69 0.968346
Target:  5'- cCGCGAGcGCCcgcgccGCGGCCCaGGCGc -3'
miRNA:   3'- -GCGCUU-UGGuuaaauUGUCGGG-CCGC- -5'
23691 3' -49.7 NC_005261.1 + 5146 0.69 0.968346
Target:  5'- uCGCGc-GCCu------CGGCCCGGCGg -3'
miRNA:   3'- -GCGCuuUGGuuaaauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 5418 0.67 0.994457
Target:  5'- cCGCGAacgaaggagacGACC------GCGGCCgCGGCGg -3'
miRNA:   3'- -GCGCU-----------UUGGuuaaauUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 5549 0.7 0.965041
Target:  5'- aGCGAGACgGGg--GGC-GCCCGaGCGg -3'
miRNA:   3'- gCGCUUUGgUUaaaUUGuCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 7963 0.71 0.940092
Target:  5'- gGUGGGcaaaucgaucGCCGA---GGCGGCCCGGUGg -3'
miRNA:   3'- gCGCUU----------UGGUUaaaUUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 11900 0.66 0.995944
Target:  5'- gCGCGcccGCCGcgggccCGGCCCGGCc -3'
miRNA:   3'- -GCGCuu-UGGUuaaauuGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 12575 0.7 0.957721
Target:  5'- aCGCGggGCCGAgaggGGC-GCCUaGCGg -3'
miRNA:   3'- -GCGCuuUGGUUaaa-UUGuCGGGcCGC- -5'
23691 3' -49.7 NC_005261.1 + 12727 0.72 0.89235
Target:  5'- gCGCGGGcccGCCGGcccccugGGCgGGCCCGGCGa -3'
miRNA:   3'- -GCGCUU---UGGUUaaa----UUG-UCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 12990 0.74 0.810764
Target:  5'- cCGCGAcGCCGAUUaGGCccgcgAGCCCGaGCGc -3'
miRNA:   3'- -GCGCUuUGGUUAAaUUG-----UCGGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 13047 0.66 0.995247
Target:  5'- gCGCGggGCCGcgcgcGCcccuGCCgGGCGc -3'
miRNA:   3'- -GCGCuuUGGUuaaauUGu---CGGgCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.