miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23691 3' -49.7 NC_005261.1 + 138014 0.73 0.87785
Target:  5'- gGCGGcccgcAGCCcggc--GCGGCCCGGCGg -3'
miRNA:   3'- gCGCU-----UUGGuuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 137913 0.67 0.991432
Target:  5'- uCGCG-GGCCccgcgAGCgGGCCCGGCu -3'
miRNA:   3'- -GCGCuUUGGuuaaaUUG-UCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 137092 0.72 0.899225
Target:  5'- gCGCaGGAGCUAGUgggAGCGGaCCCGcGCGg -3'
miRNA:   3'- -GCG-CUUUGGUUAaa-UUGUC-GGGC-CGC- -5'
23691 3' -49.7 NC_005261.1 + 137020 0.68 0.983651
Target:  5'- aGCGcgGCCAGcagAACGGCgUCGGUGg -3'
miRNA:   3'- gCGCuuUGGUUaaaUUGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 136482 0.71 0.940092
Target:  5'- gCGCGGGcAgCAGcg-AGCAGCUCGGCGc -3'
miRNA:   3'- -GCGCUU-UgGUUaaaUUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 135465 0.68 0.988779
Target:  5'- uGCGGGACCucgu--ACuGCgCGGCGa -3'
miRNA:   3'- gCGCUUUGGuuaaauUGuCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 135109 0.68 0.981811
Target:  5'- gCGCGAGGCgGAccccgcgucuccGCAGCgCGGCGg -3'
miRNA:   3'- -GCGCUUUGgUUaaau--------UGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 135081 0.7 0.957721
Target:  5'- gGCGGcgGGCUc-----GCGGCCCGGCGg -3'
miRNA:   3'- gCGCU--UUGGuuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 135039 0.67 0.990176
Target:  5'- gGCGAGGCCGAcgccugcGGCGGCagCGGCc -3'
miRNA:   3'- gCGCUUUGGUUaaa----UUGUCGg-GCCGc -5'
23691 3' -49.7 NC_005261.1 + 135011 0.7 0.965041
Target:  5'- gCGCGGcgGGCCcgcac-GCGGCCgCGGCGg -3'
miRNA:   3'- -GCGCU--UUGGuuaaauUGUCGG-GCCGC- -5'
23691 3' -49.7 NC_005261.1 + 134937 0.72 0.89235
Target:  5'- cCGCGGAggacgaGCCGAUgggcGAgGGCgCCGGCGa -3'
miRNA:   3'- -GCGCUU------UGGUUAaa--UUgUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 134187 0.7 0.953694
Target:  5'- uGCGGAggGCCuggc--GCGGCUCGGCGc -3'
miRNA:   3'- gCGCUU--UGGuuaaauUGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 133269 0.66 0.997087
Target:  5'- gCGCGAGuACCAG------GGCgCCGGCGc -3'
miRNA:   3'- -GCGCUU-UGGUUaaauugUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 133217 0.67 0.992559
Target:  5'- cCGuCGAGGCCGAgcu-GgGGCCCuacauGGCGg -3'
miRNA:   3'- -GC-GCUUUGGUUaaauUgUCGGG-----CCGC- -5'
23691 3' -49.7 NC_005261.1 + 132594 0.71 0.939598
Target:  5'- cCGCGGAcGCC-------CGGCCCGGCGa -3'
miRNA:   3'- -GCGCUU-UGGuuaaauuGUCGGGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 130857 0.69 0.971422
Target:  5'- gCGCGcccGGCCGGgcgccGCGGCCUGGCc -3'
miRNA:   3'- -GCGCu--UUGGUUaaau-UGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 130321 0.71 0.944883
Target:  5'- uGCagcGCCAug--GACGGCCCGGCc -3'
miRNA:   3'- gCGcuuUGGUuaaaUUGUCGGGCCGc -5'
23691 3' -49.7 NC_005261.1 + 129745 0.74 0.807073
Target:  5'- gGCGggGCCcggccuuCAGCaCCGGCGa -3'
miRNA:   3'- gCGCuuUGGuuaaauuGUCG-GGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 128433 0.71 0.92415
Target:  5'- cCGCGc-ACCAuggcgAACAGCgCGGCGg -3'
miRNA:   3'- -GCGCuuUGGUuaaa-UUGUCGgGCCGC- -5'
23691 3' -49.7 NC_005261.1 + 128055 0.7 0.953694
Target:  5'- uGUGGAACCGGgccaUGGCGGgCgGGCGg -3'
miRNA:   3'- gCGCUUUGGUUaa--AUUGUCgGgCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.