miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23692 3' -51.8 NC_005261.1 + 135319 0.66 0.98454
Target:  5'- gCCCUGGgcggccguGCUGGACUUUG--GCCCGGa -3'
miRNA:   3'- -GGGAUU--------UGGUCUGGAACuuCGGGCUc -5'
23692 3' -51.8 NC_005261.1 + 128323 0.66 0.982605
Target:  5'- ----cAACCAgGGCCUgcgGggGCuCCGAGa -3'
miRNA:   3'- gggauUUGGU-CUGGAa--CuuCG-GGCUC- -5'
23692 3' -51.8 NC_005261.1 + 125902 0.68 0.947919
Target:  5'- gCCUGAGCCAGAUgUguggcGggGCUCGc- -3'
miRNA:   3'- gGGAUUUGGUCUGgAa----CuuCGGGCuc -5'
23692 3' -51.8 NC_005261.1 + 125833 0.7 0.897965
Target:  5'- gCC-GGACCGGGCUUUGcAAGCCCa-- -3'
miRNA:   3'- gGGaUUUGGUCUGGAAC-UUCGGGcuc -5'
23692 3' -51.8 NC_005261.1 + 124946 0.66 0.980493
Target:  5'- gCgCUGuGCCGGcGCCcUGGAGCCCGc- -3'
miRNA:   3'- -GgGAUuUGGUC-UGGaACUUCGGGCuc -5'
23692 3' -51.8 NC_005261.1 + 121192 0.69 0.922697
Target:  5'- gCCgGGGCCGGGCCc-GggGCCgCGGGc -3'
miRNA:   3'- gGGaUUUGGUCUGGaaCuuCGG-GCUC- -5'
23692 3' -51.8 NC_005261.1 + 118361 0.7 0.897965
Target:  5'- cCUCUcgGCCGGGCgCUggGGcgcgcGGCCCGAGg -3'
miRNA:   3'- -GGGAuuUGGUCUG-GAa-CU-----UCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 110446 0.66 0.98454
Target:  5'- uCCCgc-ACCGGGCgUUUGGGuGCCUGGGc -3'
miRNA:   3'- -GGGauuUGGUCUG-GAACUU-CGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 97345 0.67 0.969804
Target:  5'- gCCaGAGCCAauGACCgUGGggucuacGGCCCGGGc -3'
miRNA:   3'- gGGaUUUGGU--CUGGaACU-------UCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 92764 0.71 0.84543
Target:  5'- gCCgcucGGACCGGGCC---GAGCCCGGGc -3'
miRNA:   3'- gGGa---UUUGGUCUGGaacUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 81214 0.76 0.608501
Target:  5'- ---cGAGCCGGACCaccgUGgcGCCCGAGg -3'
miRNA:   3'- gggaUUUGGUCUGGa---ACuuCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 78153 0.71 0.869313
Target:  5'- gCCCgccgcuGCCGGcgggccACCUgaGGAGCCCGGGg -3'
miRNA:   3'- -GGGauu---UGGUC------UGGAa-CUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 71765 0.66 0.987915
Target:  5'- aCCUccAGCCGGACCgc--GGCCCGc- -3'
miRNA:   3'- -GGGauUUGGUCUGGaacuUCGGGCuc -5'
23692 3' -51.8 NC_005261.1 + 71056 0.66 0.986969
Target:  5'- gCCgUGGGCCAGccGCCgcgcGGcgggcggggcguccgGGCCCGAGa -3'
miRNA:   3'- -GGgAUUUGGUC--UGGaa--CU---------------UCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 63918 0.67 0.970106
Target:  5'- gUCCU--GCCGcacGACCgugagcccGAAGCCCGGGu -3'
miRNA:   3'- -GGGAuuUGGU---CUGGaa------CUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 61494 0.69 0.928248
Target:  5'- aCCUGAccgagagcaccGCCGGcCCcggcGAGGCCCGGGc -3'
miRNA:   3'- gGGAUU-----------UGGUCuGGaa--CUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 60397 0.68 0.947919
Target:  5'- gCCUccauggcGCCGGGCCggcccGGGCCCGGGg -3'
miRNA:   3'- gGGAuu-----UGGUCUGGaac--UUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 37867 0.66 0.980493
Target:  5'- cCCCgacGCCuggcGGCgCgugcUGGAGCCCGAGc -3'
miRNA:   3'- -GGGauuUGGu---CUG-Ga---ACUUCGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 37647 0.72 0.819696
Target:  5'- cCCCcAAGCCcuuGGCCUUGGccCCCGAGc -3'
miRNA:   3'- -GGGaUUUGGu--CUGGAACUucGGGCUC- -5'
23692 3' -51.8 NC_005261.1 + 35321 0.66 0.984354
Target:  5'- gCUCggggAGGCCGGGCCUccccgugUGcAAGCCCGc- -3'
miRNA:   3'- -GGGa---UUUGGUCUGGA-------AC-UUCGGGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.