miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 3' -64.9 NC_005261.1 + 118995 0.67 0.43499
Target:  5'- -uCUgCGUCGGGGCCUgCUGGGCCCgCGc -3'
miRNA:   3'- uuGGgGCGGCCUCGGG-GACUUGGG-GC- -5'
23694 3' -64.9 NC_005261.1 + 69268 0.67 0.43499
Target:  5'- cGACCCCGgC-GAGCCgCCcGcgccGACCCCGg -3'
miRNA:   3'- -UUGGGGCgGcCUCGG-GGaC----UUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 110009 0.67 0.426486
Target:  5'- cACgCCCGCCGGcGCCgccguccuuucgCCUGGcgggcaGCCCCa -3'
miRNA:   3'- uUG-GGGCGGCCuCGG------------GGACU------UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 24898 0.67 0.426486
Target:  5'- uGCCCgGCgGGcGCCCCUucaAGCCCuCGg -3'
miRNA:   3'- uUGGGgCGgCCuCGGGGAc--UUGGG-GC- -5'
23694 3' -64.9 NC_005261.1 + 58541 0.67 0.426486
Target:  5'- cAGCCgCCGCCcGGGCUCCUGcGCCgUCGu -3'
miRNA:   3'- -UUGG-GGCGGcCUCGGGGACuUGG-GGC- -5'
23694 3' -64.9 NC_005261.1 + 39423 0.67 0.426486
Target:  5'- cACCCCGucccCCGGcgcguccgcagGGCCCC-GAGCCuCCGc -3'
miRNA:   3'- uUGGGGC----GGCC-----------UCGGGGaCUUGG-GGC- -5'
23694 3' -64.9 NC_005261.1 + 68530 0.67 0.426486
Target:  5'- cGGCgCCGCCGGcGCCCgCgc-GCCCCc -3'
miRNA:   3'- -UUGgGGCGGCCuCGGG-GacuUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 10511 0.67 0.425641
Target:  5'- cGGCCgCCGCUGcGGGCCCCgcggcgcgcucgcUGucgcCCCCGg -3'
miRNA:   3'- -UUGG-GGCGGC-CUCGGGG-------------ACuu--GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 117668 0.67 0.418081
Target:  5'- cGCCCCGCCGc-GCCCggccGGGCCCgCGg -3'
miRNA:   3'- uUGGGGCGGCcuCGGGga--CUUGGG-GC- -5'
23694 3' -64.9 NC_005261.1 + 33978 0.67 0.418081
Target:  5'- cGCCgCCGCCGccGCCCCggagcUGGGCUCCu -3'
miRNA:   3'- uUGG-GGCGGCcuCGGGG-----ACUUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 93601 0.67 0.418081
Target:  5'- cGACCUCGCCGucGCCCC-GggUCgCGa -3'
miRNA:   3'- -UUGGGGCGGCcuCGGGGaCuuGGgGC- -5'
23694 3' -64.9 NC_005261.1 + 20242 0.67 0.418081
Target:  5'- cGCUCCGCCGcGcGCUCCaUGGGCgCCGa -3'
miRNA:   3'- uUGGGGCGGC-CuCGGGG-ACUUGgGGC- -5'
23694 3' -64.9 NC_005261.1 + 37586 0.67 0.409778
Target:  5'- cGCCCCGguaccacaCGGccGGUCCCUGcAGCUCCGg -3'
miRNA:   3'- uUGGGGCg-------GCC--UCGGGGAC-UUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 116735 0.67 0.409778
Target:  5'- cGCCCUGCU-GAGCCCCUuugGcGCCUCGc -3'
miRNA:   3'- uUGGGGCGGcCUCGGGGA---CuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 130860 0.67 0.409778
Target:  5'- cGCCCgGCCGGGcGCCgcggCCUG-GCCUCGc -3'
miRNA:   3'- uUGGGgCGGCCU-CGG----GGACuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 109530 0.67 0.409778
Target:  5'- cGCgCCCGCCGcGGGCCCCcucgccacAACCgCCGc -3'
miRNA:   3'- uUG-GGGCGGC-CUCGGGGac------UUGG-GGC- -5'
23694 3' -64.9 NC_005261.1 + 131758 0.67 0.40813
Target:  5'- cACgCCgGCCGGcgcggcgggcgcGCCgCUGGGCCCCGa -3'
miRNA:   3'- uUG-GGgCGGCCu-----------CGGgGACUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 82800 0.67 0.401579
Target:  5'- cAGCUCCGCCGcGGCCaCCUGcAGCCggugCCGc -3'
miRNA:   3'- -UUGGGGCGGCcUCGG-GGAC-UUGG----GGC- -5'
23694 3' -64.9 NC_005261.1 + 78787 0.67 0.393484
Target:  5'- -cCCCCGCCgcaGGGGCuCCCUcucacggcuCCCCGa -3'
miRNA:   3'- uuGGGGCGG---CCUCG-GGGAcuu------GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 44913 0.67 0.393484
Target:  5'- gGACCCaCGCCGG-GCCCa---GCCgCCGa -3'
miRNA:   3'- -UUGGG-GCGGCCuCGGGgacuUGG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.