miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 3' -64.9 NC_005261.1 + 103388 0.66 0.461076
Target:  5'- cGCCgCGCCGcGGCCgCCUGcGCCuCCa -3'
miRNA:   3'- uUGGgGCGGCcUCGG-GGACuUGG-GGc -5'
23694 3' -64.9 NC_005261.1 + 15243 0.66 0.461076
Target:  5'- aGGCCCCGCuCGcaguGGGCCgC-GAucGCCCCGg -3'
miRNA:   3'- -UUGGGGCG-GC----CUCGGgGaCU--UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 14300 0.66 0.461076
Target:  5'- cGGCCCCGaCCGGuAGCCCgaGGAgCgaCGg -3'
miRNA:   3'- -UUGGGGC-GGCC-UCGGGgaCUUgGg-GC- -5'
23694 3' -64.9 NC_005261.1 + 51488 0.66 0.461076
Target:  5'- cACCggCGCCGc-GCCCCUGAugCUCGg -3'
miRNA:   3'- uUGGg-GCGGCcuCGGGGACUugGGGC- -5'
23694 3' -64.9 NC_005261.1 + 101269 0.66 0.461076
Target:  5'- cGCUCCGCaaaGG-GCUCCaUGGGCCCgCGg -3'
miRNA:   3'- uUGGGGCGg--CCuCGGGG-ACUUGGG-GC- -5'
23694 3' -64.9 NC_005261.1 + 28212 0.66 0.461076
Target:  5'- cGCCgCUGCCGcGGCCCCagcuACCCCc -3'
miRNA:   3'- uUGG-GGCGGCcUCGGGGacu-UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 102883 0.66 0.452288
Target:  5'- gAACUCgGgCgGGAGCCCCgc-GCCCCu -3'
miRNA:   3'- -UUGGGgC-GgCCUCGGGGacuUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 134993 0.66 0.452288
Target:  5'- ---gCCGCCGGGgcGCCCCUGGcgcggcggGCCCg- -3'
miRNA:   3'- uuggGGCGGCCU--CGGGGACU--------UGGGgc -5'
23694 3' -64.9 NC_005261.1 + 52841 0.66 0.452288
Target:  5'- cGCCUCGCCGGuGUCCCacgUGGcgaguccaauaGCgCCCGa -3'
miRNA:   3'- uUGGGGCGGCCuCGGGG---ACU-----------UG-GGGC- -5'
23694 3' -64.9 NC_005261.1 + 31067 0.66 0.452288
Target:  5'- gAGCCgCCGCUGcccGCCCgcgugCUGGGCCCCa -3'
miRNA:   3'- -UUGG-GGCGGCcu-CGGG-----GACUUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 35488 0.66 0.452288
Target:  5'- -uCCCUGCCGcGGCaCCCgcccuuGCCCCGc -3'
miRNA:   3'- uuGGGGCGGCcUCG-GGGacu---UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 27273 0.66 0.452288
Target:  5'- cAGCCCgGCCGGc-CCCCgGAccGCCCUc -3'
miRNA:   3'- -UUGGGgCGGCCucGGGGaCU--UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 8384 0.66 0.452288
Target:  5'- gGGCCCCcccaaGCCGGGGCUgggauUC-GAACCCCc -3'
miRNA:   3'- -UUGGGG-----CGGCCUCGG-----GGaCUUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 117631 0.67 0.443592
Target:  5'- cGACCgCGCCGG-GCCCgCgccGcGCCCCc -3'
miRNA:   3'- -UUGGgGCGGCCuCGGG-Ga--CuUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 12513 0.67 0.443592
Target:  5'- gGGCgaCCGCgCGGGGCCCCgc-GCCgCCGc -3'
miRNA:   3'- -UUGg-GGCG-GCCUCGGGGacuUGG-GGC- -5'
23694 3' -64.9 NC_005261.1 + 8 0.67 0.443592
Target:  5'- cGCCCCucguGCaGcGGGCCCCgcgcGACCCCGg -3'
miRNA:   3'- uUGGGG----CGgC-CUCGGGGac--UUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 56390 0.67 0.443592
Target:  5'- gGAgCUCGCgGGGGCCCUggGcGCCCUGc -3'
miRNA:   3'- -UUgGGGCGgCCUCGGGGa-CuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 137673 0.67 0.442727
Target:  5'- cGACCCCGgggccccccaCCGccccucgugcagcGGGCCCCgcgcGACCCCGg -3'
miRNA:   3'- -UUGGGGC----------GGC-------------CUCGGGGac--UUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 35349 0.67 0.438419
Target:  5'- cAAgCCCGCCGGAGaaggacagagguagaUcgcgCCCUG-GCCCCGa -3'
miRNA:   3'- -UUgGGGCGGCCUC---------------G----GGGACuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 69268 0.67 0.43499
Target:  5'- cGACCCCGgC-GAGCCgCCcGcgccGACCCCGg -3'
miRNA:   3'- -UUGGGGCgGcCUCGG-GGaC----UUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.