miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 3' -64.9 NC_005261.1 + 12203 0.66 0.469954
Target:  5'- cGCCgCCGCCGGugccgccGCCgCUGcugccGCCCCa -3'
miRNA:   3'- uUGG-GGCGGCCu------CGGgGACu----UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 12513 0.67 0.443592
Target:  5'- gGGCgaCCGCgCGGGGCCCCgc-GCCgCCGc -3'
miRNA:   3'- -UUGg-GGCG-GCCUCGGGGacuUGG-GGC- -5'
23694 3' -64.9 NC_005261.1 + 12730 0.72 0.206864
Target:  5'- cGGgCCCGCCGGc-CCCCUGGGCgggCCCGg -3'
miRNA:   3'- -UUgGGGCGGCCucGGGGACUUG---GGGC- -5'
23694 3' -64.9 NC_005261.1 + 14241 0.71 0.227167
Target:  5'- cGCgCCgGCCGGGGCCUUU--GCCCCGg -3'
miRNA:   3'- uUG-GGgCGGCCUCGGGGAcuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 14300 0.66 0.461076
Target:  5'- cGGCCCCGaCCGGuAGCCCgaGGAgCgaCGg -3'
miRNA:   3'- -UUGGGGC-GGCC-UCGGGgaCUUgGg-GC- -5'
23694 3' -64.9 NC_005261.1 + 15243 0.66 0.461076
Target:  5'- aGGCCCCGCuCGcaguGGGCCgC-GAucGCCCCGg -3'
miRNA:   3'- -UUGGGGCG-GC----CUCGGgGaCU--UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 15913 0.69 0.298288
Target:  5'- cGCCCCgcgcaGCCGGGGCCggggCCgGGGCCCgGg -3'
miRNA:   3'- uUGGGG-----CGGCCUCGG----GGaCUUGGGgC- -5'
23694 3' -64.9 NC_005261.1 + 16252 0.66 0.487966
Target:  5'- -uCCgCGCCGGGGCCgCCggggccGGGCUUCGg -3'
miRNA:   3'- uuGGgGCGGCCUCGG-GGa-----CUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 19872 0.76 0.115426
Target:  5'- aGACCCCGCCGGcgGGCCCgUcGucGCCCCa -3'
miRNA:   3'- -UUGGGGCGGCC--UCGGGgA-Cu-UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 19996 0.73 0.179361
Target:  5'- -uCCCCgGCCGcGGCCCCUGAcccGCaCCCGu -3'
miRNA:   3'- uuGGGG-CGGCcUCGGGGACU---UG-GGGC- -5'
23694 3' -64.9 NC_005261.1 + 20242 0.67 0.418081
Target:  5'- cGCUCCGCCGcGcGCUCCaUGGGCgCCGa -3'
miRNA:   3'- uUGGGGCGGC-CuCGGGG-ACUUGgGGC- -5'
23694 3' -64.9 NC_005261.1 + 21334 0.7 0.272823
Target:  5'- aAGCCCCuGCUGGugaagguccccGCCCCUGGcuugaGCCCUGa -3'
miRNA:   3'- -UUGGGG-CGGCCu----------CGGGGACU-----UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 21883 0.67 0.393484
Target:  5'- cGCgCCCG-CGGGGCCCCc--GCCCCc -3'
miRNA:   3'- uUG-GGGCgGCCUCGGGGacuUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 24077 0.68 0.385497
Target:  5'- gGGCCCCGCCcacccAGCCCCc--ACCCCc -3'
miRNA:   3'- -UUGGGGCGGcc---UCGGGGacuUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 24898 0.67 0.426486
Target:  5'- uGCCCgGCgGGcGCCCCUucaAGCCCuCGg -3'
miRNA:   3'- uUGGGgCGgCCuCGGGGAc--UUGGG-GC- -5'
23694 3' -64.9 NC_005261.1 + 27273 0.66 0.452288
Target:  5'- cAGCCCgGCCGGc-CCCCgGAccGCCCUc -3'
miRNA:   3'- -UUGGGgCGGCCucGGGGaCU--UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 27464 0.66 0.468172
Target:  5'- cGCCCCGCgGGgcgggcaGGCCcuccccgggcgcaCCUGGACCgCCa -3'
miRNA:   3'- uUGGGGCGgCC-------UCGG-------------GGACUUGG-GGc -5'
23694 3' -64.9 NC_005261.1 + 27704 0.7 0.285332
Target:  5'- gGACgCUCGCCGGAGCCCUc--GCCgCGg -3'
miRNA:   3'- -UUG-GGGCGGCCUCGGGGacuUGGgGC- -5'
23694 3' -64.9 NC_005261.1 + 28212 0.66 0.461076
Target:  5'- cGCCgCUGCCGcGGCCCCagcuACCCCc -3'
miRNA:   3'- uUGG-GGCGGCcUCGGGGacu-UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 28746 0.7 0.284696
Target:  5'- aGGCCCCagaggacgccgcgGCCGGGGgCgCCUGGGCCgCGg -3'
miRNA:   3'- -UUGGGG-------------CGGCCUCgG-GGACUUGGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.