miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 3' -64.9 NC_005261.1 + 12730 0.72 0.206864
Target:  5'- cGGgCCCGCCGGc-CCCCUGGGCgggCCCGg -3'
miRNA:   3'- -UUgGGGCGGCCucGGGGACUUG---GGGC- -5'
23694 3' -64.9 NC_005261.1 + 3002 0.72 0.206864
Target:  5'- cGGCCCggCGCCGGGGCuCCCgcgGGccuCCCCGu -3'
miRNA:   3'- -UUGGG--GCGGCCUCG-GGGa--CUu--GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 33255 0.72 0.211291
Target:  5'- cAUCCCGCCGGccgucgcGGCCCCcGu-CCCCGu -3'
miRNA:   3'- uUGGGGCGGCC-------UCGGGGaCuuGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 33761 0.72 0.216812
Target:  5'- cGGgCCCGCucgCGGGGCCCgcggcgagcgCUGGGCCCCGc -3'
miRNA:   3'- -UUgGGGCG---GCCUCGGG----------GACUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 95753 0.71 0.221938
Target:  5'- cGCCgCCGCCGGGGgCgCCggGAGCCUCGc -3'
miRNA:   3'- uUGG-GGCGGCCUCgG-GGa-CUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 4986 0.71 0.227167
Target:  5'- gGGCCCggagggCGCCGaGGCCCCcGGGCCCCc -3'
miRNA:   3'- -UUGGG------GCGGCcUCGGGGaCUUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 14241 0.71 0.227167
Target:  5'- cGCgCCgGCCGGGGCCUUU--GCCCCGg -3'
miRNA:   3'- uUG-GGgCGGCCUCGGGGAcuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 118630 0.71 0.227167
Target:  5'- uGGCCgCCGCgGcGGCgCUCUGGGCCCCGg -3'
miRNA:   3'- -UUGG-GGCGgCcUCG-GGGACUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 35786 0.71 0.230889
Target:  5'- gAGgCCCGCgGGcGCCauggcgcgggacggCCUGGACCCCGg -3'
miRNA:   3'- -UUgGGGCGgCCuCGG--------------GGACUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 129292 0.71 0.237938
Target:  5'- cGCCCCGCCc--GCCCCcgGcGCCCCGc -3'
miRNA:   3'- uUGGGGCGGccuCGGGGa-CuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 114993 0.71 0.243482
Target:  5'- gGGCCggCCGCCGcGGCCCCg--GCCCCGc -3'
miRNA:   3'- -UUGG--GGCGGCcUCGGGGacuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 47221 0.71 0.243482
Target:  5'- -uCgCCGCCGGGGCUCagcugGGGCCCCa -3'
miRNA:   3'- uuGgGGCGGCCUCGGGga---CUUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 45639 0.71 0.243482
Target:  5'- gGGCCCgCGCCGGAGCagugCCCagcgggcgUGAucaacgcgcGCCCCGg -3'
miRNA:   3'- -UUGGG-GCGGCCUCG----GGG--------ACU---------UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 42221 0.71 0.245729
Target:  5'- cGCCCCGCCGcGAGCUCCgccgcgcgcagcGCCUCGa -3'
miRNA:   3'- uUGGGGCGGC-CUCGGGGacu---------UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 52352 0.71 0.254891
Target:  5'- cGCUgCCGCCGGAGCCg--GAGCCCgCGg -3'
miRNA:   3'- uUGG-GGCGGCCUCGGggaCUUGGG-GC- -5'
23694 3' -64.9 NC_005261.1 + 132021 0.71 0.254891
Target:  5'- gGGCCgCCGUcaCGGAcgugGCcgCCCUGGACCCCGg -3'
miRNA:   3'- -UUGG-GGCG--GCCU----CG--GGGACUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 78156 0.7 0.266736
Target:  5'- cGCCgCUGCCGGcgGGCCaCCUGAggaGCCCgGg -3'
miRNA:   3'- uUGG-GGCGGCC--UCGG-GGACU---UGGGgC- -5'
23694 3' -64.9 NC_005261.1 + 21334 0.7 0.272823
Target:  5'- aAGCCCCuGCUGGugaagguccccGCCCCUGGcuugaGCCCUGa -3'
miRNA:   3'- -UUGGGG-CGGCCu----------CGGGGACU-----UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 28746 0.7 0.284696
Target:  5'- aGGCCCCagaggacgccgcgGCCGGGGgCgCCUGGGCCgCGg -3'
miRNA:   3'- -UUGGGG-------------CGGCCUCgG-GGACUUGGgGC- -5'
23694 3' -64.9 NC_005261.1 + 29143 0.7 0.285332
Target:  5'- cGCCCCGCCGGAcccGCCCgC-GGAUCCa- -3'
miRNA:   3'- uUGGGGCGGCCU---CGGG-GaCUUGGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.