miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 3' -64.9 NC_005261.1 + 55927 0.66 0.469954
Target:  5'- cAGCCgCCGCCGGcgcgcAGCCgUUUGGcuCCCCGg -3'
miRNA:   3'- -UUGG-GGCGGCC-----UCGG-GGACUu-GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 15243 0.66 0.461076
Target:  5'- aGGCCCCGCuCGcaguGGGCCgC-GAucGCCCCGg -3'
miRNA:   3'- -UUGGGGCG-GC----CUCGGgGaCU--UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 36582 0.66 0.491608
Target:  5'- gGGgCCCGCCgcggccaccggggggGGGcagcGCUCCUGcGCCCCGg -3'
miRNA:   3'- -UUgGGGCGG---------------CCU----CGGGGACuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 51488 0.66 0.461076
Target:  5'- cACCggCGCCGc-GCCCCUGAugCUCGg -3'
miRNA:   3'- uUGGg-GCGGCcuCGGGGACUugGGGC- -5'
23694 3' -64.9 NC_005261.1 + 32524 0.66 0.469954
Target:  5'- cGCCgCGCCcG-GCCCCg--GCCCCGg -3'
miRNA:   3'- uUGGgGCGGcCuCGGGGacuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 12203 0.66 0.469954
Target:  5'- cGCCgCCGCCGGugccgccGCCgCUGcugccGCCCCa -3'
miRNA:   3'- uUGG-GGCGGCCu------CGGgGACu----UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 27464 0.66 0.468172
Target:  5'- cGCCCCGCgGGgcgggcaGGCCcuccccgggcgcaCCUGGACCgCCa -3'
miRNA:   3'- uUGGGGCGgCC-------UCGG-------------GGACUUGG-GGc -5'
23694 3' -64.9 NC_005261.1 + 72138 0.66 0.47353
Target:  5'- gAGCCCCGggugcgacugcacguCCGGGGUgUCCgGGAUCCCGg -3'
miRNA:   3'- -UUGGGGC---------------GGCCUCG-GGGaCUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 2894 0.66 0.497093
Target:  5'- cGGCCCCGuccCCGG-GCCCCcccAGCUCCu -3'
miRNA:   3'- -UUGGGGC---GGCCuCGGGGac-UUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 39392 0.66 0.478919
Target:  5'- cGGCCCUGgCGGcGaCCC-GAGCCCCa -3'
miRNA:   3'- -UUGGGGCgGCCuCgGGGaCUUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 77563 0.66 0.478919
Target:  5'- cGCCaguggCGCCGccGCgCCCUGGcACCCCGg -3'
miRNA:   3'- uUGGg----GCGGCcuCG-GGGACU-UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 102883 0.66 0.452288
Target:  5'- gAACUCgGgCgGGAGCCCCgc-GCCCCu -3'
miRNA:   3'- -UUGGGgC-GgCCUCGGGGacuUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 9804 0.66 0.487966
Target:  5'- cACCCCaGCUGGcccAGCCCagcGAGCCCa- -3'
miRNA:   3'- uUGGGG-CGGCC---UCGGGga-CUUGGGgc -5'
23694 3' -64.9 NC_005261.1 + 82800 0.67 0.401579
Target:  5'- cAGCUCCGCCGcGGCCaCCUGcAGCCggugCCGc -3'
miRNA:   3'- -UUGGGGCGGCcUCGG-GGAC-UUGG----GGC- -5'
23694 3' -64.9 NC_005261.1 + 12513 0.67 0.443592
Target:  5'- gGGCgaCCGCgCGGGGCCCCgc-GCCgCCGc -3'
miRNA:   3'- -UUGg-GGCG-GCCUCGGGGacuUGG-GGC- -5'
23694 3' -64.9 NC_005261.1 + 8 0.67 0.443592
Target:  5'- cGCCCCucguGCaGcGGGCCCCgcgcGACCCCGg -3'
miRNA:   3'- uUGGGG----CGgC-CUCGGGGac--UUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 137673 0.67 0.442727
Target:  5'- cGACCCCGgggccccccaCCGccccucgugcagcGGGCCCCgcgcGACCCCGg -3'
miRNA:   3'- -UUGGGGC----------GGC-------------CUCGGGGac--UUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 21883 0.67 0.393484
Target:  5'- cGCgCCCG-CGGGGCCCCc--GCCCCc -3'
miRNA:   3'- uUG-GGGCgGCCUCGGGGacuUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 44913 0.67 0.393484
Target:  5'- gGACCCaCGCCGG-GCCCa---GCCgCCGa -3'
miRNA:   3'- -UUGGG-GCGGCCuCGGGgacuUGG-GGC- -5'
23694 3' -64.9 NC_005261.1 + 78787 0.67 0.393484
Target:  5'- -cCCCCGCCgcaGGGGCuCCCUcucacggcuCCCCGa -3'
miRNA:   3'- uuGGGGCGG---CCUCG-GGGAcuu------GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.