miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 3' -64.9 NC_005261.1 + 35488 0.66 0.452288
Target:  5'- -uCCCUGCCGcGGCaCCCgcccuuGCCCCGc -3'
miRNA:   3'- uuGGGGCGGCcUCG-GGGacu---UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 31067 0.66 0.452288
Target:  5'- gAGCCgCCGCUGcccGCCCgcgugCUGGGCCCCa -3'
miRNA:   3'- -UUGG-GGCGGCcu-CGGG-----GACUUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 102883 0.66 0.452288
Target:  5'- gAACUCgGgCgGGAGCCCCgc-GCCCCu -3'
miRNA:   3'- -UUGGGgC-GgCCUCGGGGacuUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 32524 0.66 0.469954
Target:  5'- cGCCgCGCCcG-GCCCCg--GCCCCGg -3'
miRNA:   3'- uUGGgGCGGcCuCGGGGacuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 27464 0.66 0.468172
Target:  5'- cGCCCCGCgGGgcgggcaGGCCcuccccgggcgcaCCUGGACCgCCa -3'
miRNA:   3'- uUGGGGCGgCC-------UCGG-------------GGACUUGG-GGc -5'
23694 3' -64.9 NC_005261.1 + 2894 0.66 0.497093
Target:  5'- cGGCCCCGuccCCGG-GCCCCcccAGCUCCu -3'
miRNA:   3'- -UUGGGGC---GGCCuCGGGGac-UUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 15243 0.66 0.461076
Target:  5'- aGGCCCCGCuCGcaguGGGCCgC-GAucGCCCCGg -3'
miRNA:   3'- -UUGGGGCG-GC----CUCGGgGaCU--UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 55927 0.66 0.469954
Target:  5'- cAGCCgCCGCCGGcgcgcAGCCgUUUGGcuCCCCGg -3'
miRNA:   3'- -UUGG-GGCGGCC-----UCGG-GGACUu-GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 8384 0.66 0.452288
Target:  5'- gGGCCCCcccaaGCCGGGGCUgggauUC-GAACCCCc -3'
miRNA:   3'- -UUGGGG-----CGGCCUCGG-----GGaCUUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 103388 0.66 0.461076
Target:  5'- cGCCgCGCCGcGGCCgCCUGcGCCuCCa -3'
miRNA:   3'- uUGGgGCGGCcUCGG-GGACuUGG-GGc -5'
23694 3' -64.9 NC_005261.1 + 72138 0.66 0.47353
Target:  5'- gAGCCCCGggugcgacugcacguCCGGGGUgUCCgGGAUCCCGg -3'
miRNA:   3'- -UUGGGGC---------------GGCCUCG-GGGaCUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 28212 0.66 0.461076
Target:  5'- cGCCgCUGCCGcGGCCCCagcuACCCCc -3'
miRNA:   3'- uUGG-GGCGGCcUCGGGGacu-UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 4942 0.66 0.461076
Target:  5'- cGCCCgCGCCGcGGCCCaggcgcCCCCGg -3'
miRNA:   3'- uUGGG-GCGGCcUCGGGgacuu-GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 101269 0.66 0.461076
Target:  5'- cGCUCCGCaaaGG-GCUCCaUGGGCCCgCGg -3'
miRNA:   3'- uUGGGGCGg--CCuCGGGG-ACUUGGG-GC- -5'
23694 3' -64.9 NC_005261.1 + 27273 0.66 0.452288
Target:  5'- cAGCCCgGCCGGc-CCCCgGAccGCCCUc -3'
miRNA:   3'- -UUGGGgCGGCCucGGGGaCU--UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 12203 0.66 0.469954
Target:  5'- cGCCgCCGCCGGugccgccGCCgCUGcugccGCCCCa -3'
miRNA:   3'- uUGG-GGCGGCCu------CGGgGACu----UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 52841 0.66 0.452288
Target:  5'- cGCCUCGCCGGuGUCCCacgUGGcgaguccaauaGCgCCCGa -3'
miRNA:   3'- uUGGGGCGGCCuCGGGG---ACU-----------UG-GGGC- -5'
23694 3' -64.9 NC_005261.1 + 29264 0.66 0.469954
Target:  5'- cGCCgCCGCUGGAggGCCCgCUGcuGACgCCCu -3'
miRNA:   3'- uUGG-GGCGGCCU--CGGG-GAC--UUG-GGGc -5'
23694 3' -64.9 NC_005261.1 + 14300 0.66 0.461076
Target:  5'- cGGCCCCGaCCGGuAGCCCgaGGAgCgaCGg -3'
miRNA:   3'- -UUGGGGC-GGCC-UCGGGgaCUUgGg-GC- -5'
23694 3' -64.9 NC_005261.1 + 51488 0.66 0.461076
Target:  5'- cACCggCGCCGc-GCCCCUGAugCUCGg -3'
miRNA:   3'- uUGGg-GCGGCcuCGGGGACUugGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.