miRNA display CGI


Results 1 - 20 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 3' -64.9 NC_005261.1 + 8 0.67 0.443592
Target:  5'- cGCCCCucguGCaGcGGGCCCCgcgcGACCCCGg -3'
miRNA:   3'- uUGGGG----CGgC-CUCGGGGac--UUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 116 0.76 0.109805
Target:  5'- cGCCCgCGCCGGcgccGCCCCUGGugCUCGc -3'
miRNA:   3'- uUGGG-GCGGCCu---CGGGGACUugGGGC- -5'
23694 3' -64.9 NC_005261.1 + 199 0.69 0.304266
Target:  5'- gGGCCagcggugCCGCCGccGCCCCUGGugcucgcggGCCCCGc -3'
miRNA:   3'- -UUGG-------GGCGGCcuCGGGGACU---------UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 1218 0.69 0.321351
Target:  5'- -cCCCCGCCGaugccgccgucgccGGCCCCggGAAgCCCGa -3'
miRNA:   3'- uuGGGGCGGCc-------------UCGGGGa-CUUgGGGC- -5'
23694 3' -64.9 NC_005261.1 + 2705 0.76 0.101852
Target:  5'- uGGCCggCGCCGG-GCCCCUG-GCCCCGg -3'
miRNA:   3'- -UUGGg-GCGGCCuCGGGGACuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 2894 0.66 0.497093
Target:  5'- cGGCCCCGuccCCGG-GCCCCcccAGCUCCu -3'
miRNA:   3'- -UUGGGGC---GGCCuCGGGGac-UUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 3002 0.72 0.206864
Target:  5'- cGGCCCggCGCCGGGGCuCCCgcgGGccuCCCCGu -3'
miRNA:   3'- -UUGGG--GCGGCCUCG-GGGa--CUu--GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 4719 0.68 0.377616
Target:  5'- cGGCCCCggaGUCGGcGGCCCCaGAGucaucgguCCCCGg -3'
miRNA:   3'- -UUGGGG---CGGCC-UCGGGGaCUU--------GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 4942 0.66 0.461076
Target:  5'- cGCCCgCGCCGcGGCCCaggcgcCCCCGg -3'
miRNA:   3'- uUGGG-GCGGCcUCGGGgacuu-GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 4986 0.71 0.227167
Target:  5'- gGGCCCggagggCGCCGaGGCCCCcGGGCCCCc -3'
miRNA:   3'- -UUGGG------GCGGCcUCGGGGaCUUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 8384 0.66 0.452288
Target:  5'- gGGCCCCcccaaGCCGGGGCUgggauUC-GAACCCCc -3'
miRNA:   3'- -UUGGGG-----CGGCCUCGG-----GGaCUUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 9328 0.7 0.289815
Target:  5'- cGCCCCGCCGccgacGAGCCCaccgGGAgcaccgccgacgauCCCCGg -3'
miRNA:   3'- uUGGGGCGGC-----CUCGGGga--CUU--------------GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 9513 0.73 0.17094
Target:  5'- gGACCCCGCCgacgauccuGGAGCCUCgccGAcgACCCCc -3'
miRNA:   3'- -UUGGGGCGG---------CCUCGGGGa--CU--UGGGGc -5'
23694 3' -64.9 NC_005261.1 + 9566 0.7 0.291754
Target:  5'- cGAUCCCGCCagguGAGCCCCgcccacccAGCCCCc -3'
miRNA:   3'- -UUGGGGCGGc---CUCGGGGac------UUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 9804 0.66 0.487966
Target:  5'- cACCCCaGCUGGcccAGCCCagcGAGCCCa- -3'
miRNA:   3'- uUGGGG-CGGCC---UCGGGga-CUUGGGgc -5'
23694 3' -64.9 NC_005261.1 + 9861 0.74 0.15897
Target:  5'- cGCCCCaGCCGGccuGCCCCggcGAGCCCa- -3'
miRNA:   3'- uUGGGG-CGGCCu--CGGGGa--CUUGGGgc -5'
23694 3' -64.9 NC_005261.1 + 9918 0.74 0.15897
Target:  5'- cGCCCCaGCCGGccuGCCCCggcGAGCCCa- -3'
miRNA:   3'- uUGGGG-CGGCCu--CGGGGa--CUUGGGgc -5'
23694 3' -64.9 NC_005261.1 + 10511 0.67 0.425641
Target:  5'- cGGCCgCCGCUGcGGGCCCCgcggcgcgcucgcUGucgcCCCCGg -3'
miRNA:   3'- -UUGG-GGCGGC-CUCGGGG-------------ACuu--GGGGC- -5'
23694 3' -64.9 NC_005261.1 + 11653 0.74 0.147762
Target:  5'- gAGCCCCGCCGGAGCCCCUn------- -3'
miRNA:   3'- -UUGGGGCGGCCUCGGGGAcuuggggc -5'
23694 3' -64.9 NC_005261.1 + 11672 1.05 0.000795
Target:  5'- gAACCCCGCCGGAGCCCCUGAACCCCGc -3'
miRNA:   3'- -UUGGGGCGGCCUCGGGGACUUGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.