miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 3' -64.9 NC_005261.1 + 137882 0.69 0.304266
Target:  5'- gGGCCagcggugCCGCCGccGCCCCUGGugcucgcggGCCCCGc -3'
miRNA:   3'- -UUGG-------GGCGGCcuCGGGGACU---------UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 137799 0.76 0.109805
Target:  5'- cGCCCgCGCCGGcgccGCCCCUGGugCUCGc -3'
miRNA:   3'- uUGGG-GCGGCCu---CGGGGACUugGGGC- -5'
23694 3' -64.9 NC_005261.1 + 137673 0.67 0.442727
Target:  5'- cGACCCCGgggccccccaCCGccccucgugcagcGGGCCCCgcgcGACCCCGg -3'
miRNA:   3'- -UUGGGGC----------GGC-------------CUCGGGGac--UUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 134993 0.66 0.452288
Target:  5'- ---gCCGCCGGGgcGCCCCUGGcgcggcggGCCCg- -3'
miRNA:   3'- uuggGGCGGCCU--CGGGGACU--------UGGGgc -5'
23694 3' -64.9 NC_005261.1 + 133692 0.68 0.347197
Target:  5'- cGCUCCGCUgGGAGCUgCgcGACCCCGg -3'
miRNA:   3'- uUGGGGCGG-CCUCGGgGacUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 132021 0.71 0.254891
Target:  5'- gGGCCgCCGUcaCGGAcgugGCcgCCCUGGACCCCGg -3'
miRNA:   3'- -UUGG-GGCG--GCCU----CG--GGGACUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 131758 0.67 0.40813
Target:  5'- cACgCCgGCCGGcgcggcgggcgcGCCgCUGGGCCCCGa -3'
miRNA:   3'- uUG-GGgCGGCCu-----------CGGgGACUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 130860 0.67 0.409778
Target:  5'- cGCCCgGCCGGGcGCCgcggCCUG-GCCUCGc -3'
miRNA:   3'- uUGGGgCGGCCU-CGG----GGACuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 129292 0.71 0.237938
Target:  5'- cGCCCCGCCc--GCCCCcgGcGCCCCGc -3'
miRNA:   3'- uUGGGGCGGccuCGGGGa-CuUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 128328 0.66 0.478919
Target:  5'- aGGgCCUGCgGGGGCUCCgaGAgcggcACCCCGc -3'
miRNA:   3'- -UUgGGGCGgCCUCGGGGa-CU-----UGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 127302 0.68 0.347197
Target:  5'- -uCCCCGCCGGcuggcgguggGGCCCUgccGCCCgCGg -3'
miRNA:   3'- uuGGGGCGGCC----------UCGGGGacuUGGG-GC- -5'
23694 3' -64.9 NC_005261.1 + 126198 0.69 0.31857
Target:  5'- cAGCCCCGCgCGGAccagcggcaGCCCC--AGCuCCCGa -3'
miRNA:   3'- -UUGGGGCG-GCCU---------CGGGGacUUG-GGGC- -5'
23694 3' -64.9 NC_005261.1 + 124932 0.69 0.311696
Target:  5'- aGGCUCCGCCGcGcgcgcugugccGGCgCCCUGGAgCCCGc -3'
miRNA:   3'- -UUGGGGCGGC-C-----------UCG-GGGACUUgGGGC- -5'
23694 3' -64.9 NC_005261.1 + 120964 0.69 0.339871
Target:  5'- cGCCCCGCgGGGcgcguGCCgCCgcaGGCCCCGu -3'
miRNA:   3'- uUGGGGCGgCCU-----CGG-GGac-UUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 119963 0.66 0.487966
Target:  5'- cGCaCCCGCCGu--CUCCgucGAGCCCCGg -3'
miRNA:   3'- uUG-GGGCGGCcucGGGGa--CUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 118995 0.67 0.43499
Target:  5'- -uCUgCGUCGGGGCCUgCUGGGCCCgCGc -3'
miRNA:   3'- uuGGgGCGGCCUCGGG-GACUUGGG-GC- -5'
23694 3' -64.9 NC_005261.1 + 118630 0.71 0.227167
Target:  5'- uGGCCgCCGCgGcGGCgCUCUGGGCCCCGg -3'
miRNA:   3'- -UUGG-GGCGgCcUCG-GGGACUUGGGGC- -5'
23694 3' -64.9 NC_005261.1 + 117668 0.67 0.418081
Target:  5'- cGCCCCGCCGc-GCCCggccGGGCCCgCGg -3'
miRNA:   3'- uUGGGGCGGCcuCGGGga--CUUGGG-GC- -5'
23694 3' -64.9 NC_005261.1 + 117631 0.67 0.443592
Target:  5'- cGACCgCGCCGG-GCCCgCgccGcGCCCCc -3'
miRNA:   3'- -UUGGgGCGGCCuCGGG-Ga--CuUGGGGc -5'
23694 3' -64.9 NC_005261.1 + 117295 0.68 0.377616
Target:  5'- cGAgCCCGCCcucGAGCCCa---GCCCCGg -3'
miRNA:   3'- -UUgGGGCGGc--CUCGGGgacuUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.