Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23694 | 3' | -64.9 | NC_005261.1 | + | 11672 | 1.05 | 0.000795 |
Target: 5'- gAACCCCGCCGGAGCCCCUGAACCCCGc -3' miRNA: 3'- -UUGGGGCGGCCUCGGGGACUUGGGGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 37727 | 0.77 | 0.085359 |
Target: 5'- --gCCCGCCGGAGCCCCccgucGCCCCc -3' miRNA: 3'- uugGGGCGGCCUCGGGGacu--UGGGGc -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 68751 | 0.77 | 0.087549 |
Target: 5'- aAGCgCCCGCCGGGGCgCCgcgGAGCCgCCGu -3' miRNA: 3'- -UUG-GGGCGGCCUCGgGGa--CUUGG-GGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 2705 | 0.76 | 0.101852 |
Target: 5'- uGGCCggCGCCGG-GCCCCUG-GCCCCGg -3' miRNA: 3'- -UUGGg-GCGGCCuCGGGGACuUGGGGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 137799 | 0.76 | 0.109805 |
Target: 5'- cGCCCgCGCCGGcgccGCCCCUGGugCUCGc -3' miRNA: 3'- uUGGG-GCGGCCu---CGGGGACUugGGGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 116 | 0.76 | 0.109805 |
Target: 5'- cGCCCgCGCCGGcgccGCCCCUGGugCUCGc -3' miRNA: 3'- uUGGG-GCGGCCu---CGGGGACUugGGGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 34608 | 0.76 | 0.112583 |
Target: 5'- cGGCCUggccgacgCGCUGGAGCCCCUGAuaggcgaggagGCCCCc -3' miRNA: 3'- -UUGGG--------GCGGCCUCGGGGACU-----------UGGGGc -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 19872 | 0.76 | 0.115426 |
Target: 5'- aGACCCCGCCGGcgGGCCCgUcGucGCCCCa -3' miRNA: 3'- -UUGGGGCGGCC--UCGGGgA-Cu-UGGGGc -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 11653 | 0.74 | 0.147762 |
Target: 5'- gAGCCCCGCCGGAGCCCCUn------- -3' miRNA: 3'- -UUGGGGCGGCCUCGGGGAcuuggggc -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 78089 | 0.74 | 0.151416 |
Target: 5'- uGGCCCCcgcGCCGGcccaGGCCCCg--GCCCCGg -3' miRNA: 3'- -UUGGGG---CGGCC----UCGGGGacuUGGGGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 82424 | 0.74 | 0.15897 |
Target: 5'- cGGCCCCGCCGuccgcGCCCCcGGccgGCCCCGc -3' miRNA: 3'- -UUGGGGCGGCcu---CGGGGaCU---UGGGGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 9918 | 0.74 | 0.15897 |
Target: 5'- cGCCCCaGCCGGccuGCCCCggcGAGCCCa- -3' miRNA: 3'- uUGGGG-CGGCCu--CGGGGa--CUUGGGgc -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 9861 | 0.74 | 0.15897 |
Target: 5'- cGCCCCaGCCGGccuGCCCCggcGAGCCCa- -3' miRNA: 3'- uUGGGG-CGGCCu--CGGGGa--CUUGGGgc -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 35686 | 0.73 | 0.162874 |
Target: 5'- -cCCCCGCCGGcgAGCCCCggugggccgGGggcucgguggcgGCCCCGg -3' miRNA: 3'- uuGGGGCGGCC--UCGGGGa--------CU------------UGGGGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 9513 | 0.73 | 0.17094 |
Target: 5'- gGACCCCGCCgacgauccuGGAGCCUCgccGAcgACCCCc -3' miRNA: 3'- -UUGGGGCGG---------CCUCGGGGa--CU--UGGGGc -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 19996 | 0.73 | 0.179361 |
Target: 5'- -uCCCCgGCCGcGGCCCCUGAcccGCaCCCGu -3' miRNA: 3'- uuGGGG-CGGCcUCGGGGACU---UG-GGGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 51396 | 0.73 | 0.181089 |
Target: 5'- gAACUCCGCgagCGGAGCCCgCgcgcccaccgccugcUGGGCCCCGg -3' miRNA: 3'- -UUGGGGCG---GCCUCGGG-G---------------ACUUGGGGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 84283 | 0.72 | 0.197313 |
Target: 5'- -gUgCCGCCGGcGGCCCCg--GCCCCGg -3' miRNA: 3'- uuGgGGCGGCC-UCGGGGacuUGGGGC- -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 30705 | 0.72 | 0.197313 |
Target: 5'- gAGgCCCGCgGGAGCCCCggcgccGGGCCgCCa -3' miRNA: 3'- -UUgGGGCGgCCUCGGGGa-----CUUGG-GGc -5' |
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23694 | 3' | -64.9 | NC_005261.1 | + | 109894 | 0.72 | 0.202039 |
Target: 5'- cGCCCCGg-GGcuacAGCCCCUGGACCgCCGg -3' miRNA: 3'- uUGGGGCggCC----UCGGGGACUUGG-GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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