Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23694 | 5' | -59.3 | NC_005261.1 | + | 25380 | 0.66 | 0.771836 |
Target: 5'- cCCGGcacGGcGcGcGGGuCGGGGGAGGAGAg -3' miRNA: 3'- uGGCCu--UCaC-C-CCC-GCUCCCUUCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 27209 | 0.75 | 0.273318 |
Target: 5'- -gCGGAGG-GGGGGaaaGGGGGAAGGGu -3' miRNA: 3'- ugGCCUUCaCCCCCg--CUCCCUUCUCu -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 11794 | 0.75 | 0.273318 |
Target: 5'- -gCGGAGGggggaagGGGGGCgGAGGGGgaaAGAGAg -3' miRNA: 3'- ugGCCUUCa------CCCCCG-CUCCCU---UCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 56007 | 0.75 | 0.273318 |
Target: 5'- -gCGGggGcGGGGGCG-GGGAAGAc- -3' miRNA: 3'- ugGCCuuCaCCCCCGCuCCCUUCUcu -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 9630 | 0.75 | 0.279725 |
Target: 5'- -gCGGggGUGGGGGCuGGGuGGgcGGGGc -3' miRNA: 3'- ugGCCuuCACCCCCG-CUC-CCuuCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 24127 | 0.75 | 0.279725 |
Target: 5'- -gCGGggGUGGGGGCuGGGuGGgcGGGGc -3' miRNA: 3'- ugGCCuuCACCCCCG-CUC-CCuuCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 24289 | 0.74 | 0.312846 |
Target: 5'- -gUGGggGUGGGGGgccaggaugagggUGGGGGggGGGGc -3' miRNA: 3'- ugGCCuuCACCCCC-------------GCUCCCuuCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 129495 | 0.74 | 0.313553 |
Target: 5'- cACC-GAGG-GGGGGaGGGGGAAGGGAa -3' miRNA: 3'- -UGGcCUUCaCCCCCgCUCCCUUCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 32992 | 0.74 | 0.313553 |
Target: 5'- -gCGGAGGaGGGGGCcgaccGGGGAAGGGGg -3' miRNA: 3'- ugGCCUUCaCCCCCGc----UCCCUUCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 11332 | 0.75 | 0.267029 |
Target: 5'- -gUGGggGUGGGGaGgGAGGGcAGGGAg -3' miRNA: 3'- ugGCCuuCACCCC-CgCUCCCuUCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 35212 | 0.76 | 0.254803 |
Target: 5'- uGCCGGGAGUGGcGGCugGAGGGGacccggcaggaGGAGAg -3' miRNA: 3'- -UGGCCUUCACCcCCG--CUCCCU-----------UCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 26878 | 0.76 | 0.254803 |
Target: 5'- -gCGGggGUGGGuGGgGGGGGgcGGGGg -3' miRNA: 3'- ugGCCuuCACCC-CCgCUCCCuuCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 15953 | 0.82 | 0.104015 |
Target: 5'- aGCCGGGggcgAGUGGcGGGCGGGGGAGGGc- -3' miRNA: 3'- -UGGCCU----UCACC-CCCGCUCCCUUCUcu -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 78465 | 0.81 | 0.109533 |
Target: 5'- --gGGAuGGUGGGGGCGAGGGggGAa- -3' miRNA: 3'- uggCCU-UCACCCCCGCUCCCuuCUcu -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 32935 | 0.81 | 0.118326 |
Target: 5'- -gCGGggG-GGGGGCG-GGGAGGGGAg -3' miRNA: 3'- ugGCCuuCaCCCCCGCuCCCUUCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 13710 | 0.8 | 0.131075 |
Target: 5'- gGCUGGggGcGGGGGUGGGGGuGGGGGu -3' miRNA: 3'- -UGGCCuuCaCCCCCGCUCCCuUCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 1003 | 0.78 | 0.186229 |
Target: 5'- -aCGGggGcgGGGGGCGGGGGgcGGGu -3' miRNA: 3'- ugGCCuuCa-CCCCCGCUCCCuuCUCu -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 58289 | 0.76 | 0.226246 |
Target: 5'- gGCCGGcgcgccgGGGGGCGcGGGGAGGGGGc -3' miRNA: 3'- -UGGCCuuca---CCCCCGC-UCCCUUCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 136182 | 0.76 | 0.248864 |
Target: 5'- aGCgaGGAAaaGGGGGCGAGGaGAAGGGAg -3' miRNA: 3'- -UGg-CCUUcaCCCCCGCUCC-CUUCUCU- -5' |
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23694 | 5' | -59.3 | NC_005261.1 | + | 55284 | 0.76 | 0.251225 |
Target: 5'- cGCCGGAGGcGGGGGCGcugaagagccggugcGGGGGgucAGGGGg -3' miRNA: 3'- -UGGCCUUCaCCCCCGC---------------UCCCU---UCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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