miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 5' -59.3 NC_005261.1 + 469 0.69 0.564758
Target:  5'- gGCCGGc---GGGauGGCGcGGGGAGGAGAg -3'
miRNA:   3'- -UGGCCuucaCCC--CCGC-UCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 495 0.67 0.665004
Target:  5'- --aGGAGGgagGGGGaGgGAGaGGggGGGAg -3'
miRNA:   3'- uggCCUUCa--CCCC-CgCUC-CCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 1003 0.78 0.186229
Target:  5'- -aCGGggGcgGGGGGCGGGGGgcGGGu -3'
miRNA:   3'- ugGCCuuCa-CCCCCGCUCCCuuCUCu -5'
23694 5' -59.3 NC_005261.1 + 5317 0.71 0.45066
Target:  5'- --aGGAGGaGGGGGU-AGGGGAGAGGc -3'
miRNA:   3'- uggCCUUCaCCCCCGcUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 5356 0.67 0.665004
Target:  5'- gGCUGGucGGUGGauacggagacGGGgGAGGGAGGgAGGg -3'
miRNA:   3'- -UGGCCu-UCACC----------CCCgCUCCCUUC-UCU- -5'
23694 5' -59.3 NC_005261.1 + 5646 0.7 0.496846
Target:  5'- --aGGggG-GGGGGCGGGcaacgaggaGGGAGAGGg -3'
miRNA:   3'- uggCCuuCaCCCCCGCUC---------CCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 7181 0.68 0.604681
Target:  5'- -gCGGAGaaGGGGG-GAGGGggGGGu -3'
miRNA:   3'- ugGCCUUcaCCCCCgCUCCCuuCUCu -5'
23694 5' -59.3 NC_005261.1 + 7332 0.66 0.771836
Target:  5'- -aCGGAAaaGGGGGaggaggaGAGaGGGAGAGGg -3'
miRNA:   3'- ugGCCUUcaCCCCCg------CUC-CCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 7978 0.67 0.675014
Target:  5'- cGCCGaGGcggcccGGUGGGa--GAGGGggGAGAg -3'
miRNA:   3'- -UGGC-CU------UCACCCccgCUCCCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 8831 0.71 0.478102
Target:  5'- cGCCGGGcaaGGGGGCG-GGGAcaggccgugGGAGGg -3'
miRNA:   3'- -UGGCCUucaCCCCCGCuCCCU---------UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 9126 0.72 0.397673
Target:  5'- cGCCGGGAcUGGGGGCGGgugcaggcaaaucGGGcuGGGAc -3'
miRNA:   3'- -UGGCCUUcACCCCCGCU-------------CCCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 9630 0.75 0.279725
Target:  5'- -gCGGggGUGGGGGCuGGGuGGgcGGGGc -3'
miRNA:   3'- ugGCCuuCACCCCCG-CUC-CCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 11332 0.75 0.267029
Target:  5'- -gUGGggGUGGGGaGgGAGGGcAGGGAg -3'
miRNA:   3'- ugGCCuuCACCCC-CgCUCCCuUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 11390 0.68 0.654969
Target:  5'- --aGGGAGUGuGGGCGggcgcGGGGaAAGAGAg -3'
miRNA:   3'- uggCCUUCACcCCCGC-----UCCC-UUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 11430 0.73 0.373925
Target:  5'- gGCgGGcGGgGGGGGCGGcGGAAGAGGg -3'
miRNA:   3'- -UGgCCuUCaCCCCCGCUcCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 11474 0.68 0.624788
Target:  5'- gGCgCGGAGGgGcGGGGCGGGGGugccggcucGAGGc -3'
miRNA:   3'- -UG-GCCUUCaC-CCCCGCUCCCuu-------CUCU- -5'
23694 5' -59.3 NC_005261.1 + 11708 1.08 0.001496
Target:  5'- aACCGGAAGUGGGGGCGAGGGAAGAGAg -3'
miRNA:   3'- -UGGCCUUCACCCCCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 11794 0.75 0.273318
Target:  5'- -gCGGAGGggggaagGGGGGCgGAGGGGgaaAGAGAg -3'
miRNA:   3'- ugGCCUUCa------CCCCCG-CUCCCU---UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 13710 0.8 0.131075
Target:  5'- gGCUGGggGcGGGGGUGGGGGuGGGGGu -3'
miRNA:   3'- -UGGCCuuCaCCCCCGCUCCCuUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 15026 0.67 0.694924
Target:  5'- gUCGGcGGGUgccGGGGGCGuAGcGGggGGGGu -3'
miRNA:   3'- uGGCC-UUCA---CCCCCGC-UC-CCuuCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.