miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 5' -59.3 NC_005261.1 + 15434 0.67 0.71463
Target:  5'- gGCCGGgcGcGGGccGGCGAuGGaGAAGAGc -3'
miRNA:   3'- -UGGCCuuCaCCC--CCGCU-CC-CUUCUCu -5'
23694 5' -59.3 NC_005261.1 + 15953 0.82 0.104015
Target:  5'- aGCCGGGggcgAGUGGcGGGCGGGGGAGGGc- -3'
miRNA:   3'- -UGGCCU----UCACC-CCCGCUCCCUUCUcu -5'
23694 5' -59.3 NC_005261.1 + 16177 0.66 0.762552
Target:  5'- gGCgCGGgcGUGGcGGGgGuGGGcGGGGGc -3'
miRNA:   3'- -UG-GCCuuCACC-CCCgCuCCCuUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 22091 0.71 0.45066
Target:  5'- cGCCGc--GUGGGGGCGGGaGGGcggugugcGGAGAg -3'
miRNA:   3'- -UGGCcuuCACCCCCGCUC-CCU--------UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 22131 0.66 0.734064
Target:  5'- -gCGGuauacGGcGGGGG-GGGGGAAGGGGc -3'
miRNA:   3'- ugGCCu----UCaCCCCCgCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 22540 0.68 0.621769
Target:  5'- -aCGGAGGgccgGGGccgcggcgagauacGGgGAGGGGAGGGGg -3'
miRNA:   3'- ugGCCUUCa---CCC--------------CCgCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 22979 0.73 0.382004
Target:  5'- gACCGGGAG-GaGGcGGCGGaGGAAGAGGg -3'
miRNA:   3'- -UGGCCUUCaC-CC-CCGCUcCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 23623 0.7 0.53527
Target:  5'- uGCCGGGgcgcGGcGGGGGuCGGGcggcuGGAAGGGAg -3'
miRNA:   3'- -UGGCCU----UCaCCCCC-GCUC-----CCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 24127 0.75 0.279725
Target:  5'- -gCGGggGUGGGGGCuGGGuGGgcGGGGc -3'
miRNA:   3'- ugGCCuuCACCCCCG-CUC-CCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 24289 0.74 0.312846
Target:  5'- -gUGGggGUGGGGGgccaggaugagggUGGGGGggGGGGc -3'
miRNA:   3'- ugGCCuuCACCCCC-------------GCUCCCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 25380 0.66 0.771836
Target:  5'- cCCGGcacGGcGcGcGGGuCGGGGGAGGAGAg -3'
miRNA:   3'- uGGCCu--UCaC-C-CCC-GCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 26714 0.72 0.432854
Target:  5'- cUCGGggGgGGGGGUG-GGGAaaguggaaAGAGAg -3'
miRNA:   3'- uGGCCuuCaCCCCCGCuCCCU--------UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 26833 0.67 0.694924
Target:  5'- uCUGGGAG-GGGGGCGGuGGGcggucaaaacGGGAGc -3'
miRNA:   3'- uGGCCUUCaCCCCCGCU-CCC----------UUCUCu -5'
23694 5' -59.3 NC_005261.1 + 26878 0.76 0.254803
Target:  5'- -gCGGggGUGGGuGGgGGGGGgcGGGGg -3'
miRNA:   3'- ugGCCuuCACCC-CCgCUCCCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 27209 0.75 0.273318
Target:  5'- -gCGGAGG-GGGGGaaaGGGGGAAGGGu -3'
miRNA:   3'- ugGCCUUCaCCCCCg--CUCCCUUCUCu -5'
23694 5' -59.3 NC_005261.1 + 27308 0.69 0.574686
Target:  5'- gGCCGGGccaacgcgcgcgGGUcaaGGGGGCGgaacgGGGGAaagGGGGAg -3'
miRNA:   3'- -UGGCCU------------UCA---CCCCCGC-----UCCCU---UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 28020 0.71 0.459713
Target:  5'- gGCCGGcg--GGGaGGaGAGGGAGGGGAg -3'
miRNA:   3'- -UGGCCuucaCCC-CCgCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 28525 0.67 0.68499
Target:  5'- cCCGGAg--GGGGGCcc-GGAGGAGGa -3'
miRNA:   3'- uGGCCUucaCCCCCGcucCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 29073 0.67 0.68499
Target:  5'- cACUGGAuuuaGGgacucGGGGGCcGGGGAcucGGGGAc -3'
miRNA:   3'- -UGGCCU----UCa----CCCCCGcUCCCU---UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 29450 0.73 0.365961
Target:  5'- uGCCGGAGaUGGGGGaCGcGGGGAAGcAGu -3'
miRNA:   3'- -UGGCCUUcACCCCC-GC-UCCCUUC-UCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.