miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 5' -59.3 NC_005261.1 + 57179 0.74 0.335294
Target:  5'- --aGGGAGUGGGGuCGGcGGGAAGGGGg -3'
miRNA:   3'- uggCCUUCACCCCcGCU-CCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 30808 0.73 0.358116
Target:  5'- gGCCGGAGGagcUGGGGGgGcccGGGGAcGGGGc -3'
miRNA:   3'- -UGGCCUUC---ACCCCCgC---UCCCUuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 29450 0.73 0.365961
Target:  5'- uGCCGGAGaUGGGGGaCGcGGGGAAGcAGu -3'
miRNA:   3'- -UGGCCUUcACCCCC-GC-UCCCUUC-UCu -5'
23694 5' -59.3 NC_005261.1 + 11430 0.73 0.373925
Target:  5'- gGCgGGcGGgGGGGGCGGcGGAAGAGGg -3'
miRNA:   3'- -UGgCCuUCaCCCCCGCUcCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 22979 0.73 0.382004
Target:  5'- gACCGGGAG-GaGGcGGCGGaGGAAGAGGg -3'
miRNA:   3'- -UGGCCUUCaC-CC-CCGCUcCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 117774 0.73 0.382004
Target:  5'- uCCGGAuc--GGGGCGGGGaGGAGGGAg -3'
miRNA:   3'- uGGCCUucacCCCCGCUCC-CUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 9126 0.72 0.397673
Target:  5'- cGCCGGGAcUGGGGGCGGgugcaggcaaaucGGGcuGGGAc -3'
miRNA:   3'- -UGGCCUUcACCCCCGCU-------------CCCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 96484 0.72 0.398509
Target:  5'- gGCUGGggGUGauGGGaGCaguGGGGAAGAGGg -3'
miRNA:   3'- -UGGCCuuCAC--CCC-CGc--UCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 26714 0.72 0.432854
Target:  5'- cUCGGggGgGGGGGUG-GGGAaaguggaaAGAGAg -3'
miRNA:   3'- uGGCCuuCaCCCCCGCuCCCU--------UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 90153 0.71 0.441706
Target:  5'- gAUgGGGAGgaugacgGGGaGGCgGAGGGggGGGAc -3'
miRNA:   3'- -UGgCCUUCa------CCC-CCG-CUCCCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 22091 0.71 0.45066
Target:  5'- cGCCGc--GUGGGGGCGGGaGGGcggugugcGGAGAg -3'
miRNA:   3'- -UGGCcuuCACCCCCGCUC-CCU--------UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 5317 0.71 0.45066
Target:  5'- --aGGAGGaGGGGGU-AGGGGAGAGGc -3'
miRNA:   3'- uggCCUUCaCCCCCGcUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 28020 0.71 0.459713
Target:  5'- gGCCGGcg--GGGaGGaGAGGGAGGGGAg -3'
miRNA:   3'- -UGGCCuucaCCC-CCgCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 8831 0.71 0.478102
Target:  5'- cGCCGGGcaaGGGGGCG-GGGAcaggccgugGGAGGg -3'
miRNA:   3'- -UGGCCUucaCCCCCGCuCCCU---------UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 110793 0.7 0.496846
Target:  5'- uCCGGggGacGGcGGGCGAGGaGgcGGGGg -3'
miRNA:   3'- uGGCCuuCa-CC-CCCGCUCC-CuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 56129 0.7 0.496846
Target:  5'- cGCCGcAGGgcgGGGGGCGcGGGccGAGGg -3'
miRNA:   3'- -UGGCcUUCa--CCCCCGCuCCCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 5646 0.7 0.496846
Target:  5'- --aGGggG-GGGGGCGGGcaacgaggaGGGAGAGGg -3'
miRNA:   3'- uggCCuuCaCCCCCGCUC---------CCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 23623 0.7 0.53527
Target:  5'- uGCCGGGgcgcGGcGGGGGuCGGGcggcuGGAAGGGAg -3'
miRNA:   3'- -UGGCCU----UCaCCCCC-GCUC-----CCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 138140 0.69 0.564758
Target:  5'- gGCCGGc---GGGauGGCGcGGGGAGGAGAg -3'
miRNA:   3'- -UGGCCuucaCCC--CCGC-UCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137133 0.69 0.564758
Target:  5'- -gUGGAAGgagcgagggaGGaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- ugGCCUUCa---------CC-CC-CGCUCCCUUCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.