miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 5' -59.3 NC_005261.1 + 127310 0.67 0.694924
Target:  5'- gGCUGGcGGUGGGGcccugccgcccGCGGGGGccGGAGc -3'
miRNA:   3'- -UGGCCuUCACCCC-----------CGCUCCCu-UCUCu -5'
23694 5' -59.3 NC_005261.1 + 15026 0.67 0.694924
Target:  5'- gUCGGcGGGUgccGGGGGCGuAGcGGggGGGGu -3'
miRNA:   3'- uGGCC-UUCA---CCCCCGC-UC-CCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 29073 0.67 0.68499
Target:  5'- cACUGGAuuuaGGgacucGGGGGCcGGGGAcucGGGGAc -3'
miRNA:   3'- -UGGCCU----UCa----CCCCCGcUCCCU---UCUCU- -5'
23694 5' -59.3 NC_005261.1 + 28525 0.67 0.68499
Target:  5'- cCCGGAg--GGGGGCcc-GGAGGAGGa -3'
miRNA:   3'- uGGCCUucaCCCCCGcucCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 108904 0.67 0.68499
Target:  5'- cGCCGGcGAGcGGGGcGCG-GGGucGGGGc -3'
miRNA:   3'- -UGGCC-UUCaCCCC-CGCuCCCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 98391 0.67 0.68499
Target:  5'- uACCGGc-GUGGGGGCGGGcgcGGAcucuGGuGGg -3'
miRNA:   3'- -UGGCCuuCACCCCCGCUC---CCU----UCuCU- -5'
23694 5' -59.3 NC_005261.1 + 7978 0.67 0.675014
Target:  5'- cGCCGaGGcggcccGGUGGGa--GAGGGggGAGAg -3'
miRNA:   3'- -UGGC-CU------UCACCCccgCUCCCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 5356 0.67 0.665004
Target:  5'- gGCUGGucGGUGGauacggagacGGGgGAGGGAGGgAGGg -3'
miRNA:   3'- -UGGCCu-UCACC----------CCCgCUCCCUUC-UCU- -5'
23694 5' -59.3 NC_005261.1 + 138166 0.67 0.665004
Target:  5'- --aGGAGGgagGGGGaGgGAGaGGggGGGAg -3'
miRNA:   3'- uggCCUUCa--CCCC-CgCUC-CCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 495 0.67 0.665004
Target:  5'- --aGGAGGgagGGGGaGgGAGaGGggGGGAg -3'
miRNA:   3'- uggCCUUCa--CCCC-CgCUC-CCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 30447 0.68 0.654969
Target:  5'- gACgGGGAGgacgaggacggGGGGGaCGGGGGGGacGAGGa -3'
miRNA:   3'- -UGgCCUUCa----------CCCCC-GCUCCCUU--CUCU- -5'
23694 5' -59.3 NC_005261.1 + 11390 0.68 0.654969
Target:  5'- --aGGGAGUGuGGGCGggcgcGGGGaAAGAGAg -3'
miRNA:   3'- uggCCUUCACcCCCGC-----UCCC-UUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 115048 0.68 0.644916
Target:  5'- cACCcuggcGAAG-GGGGGCGGGGuGggGAu- -3'
miRNA:   3'- -UGGc----CUUCaCCCCCGCUCC-CuuCUcu -5'
23694 5' -59.3 NC_005261.1 + 30488 0.68 0.630827
Target:  5'- gGCCGGGgccucggaaaccAGcgaGGGGGaggaggaggaggaGAGGGAGGAGGa -3'
miRNA:   3'- -UGGCCU------------UCa--CCCCCg------------CUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 11474 0.68 0.624788
Target:  5'- gGCgCGGAGGgGcGGGGCGGGGGugccggcucGAGGc -3'
miRNA:   3'- -UG-GCCUUCaC-CCCCGCUCCCuu-------CUCU- -5'
23694 5' -59.3 NC_005261.1 + 22540 0.68 0.621769
Target:  5'- -aCGGAGGgccgGGGccgcggcgagauacGGgGAGGGGAGGGGg -3'
miRNA:   3'- ugGCCUUCa---CCC--------------CCgCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137253 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137337 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137309 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137225 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.