miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23694 5' -59.3 NC_005261.1 + 138166 0.67 0.665004
Target:  5'- --aGGAGGgagGGGGaGgGAGaGGggGGGAg -3'
miRNA:   3'- uggCCUUCa--CCCC-CgCUC-CCuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 138140 0.69 0.564758
Target:  5'- gGCCGGc---GGGauGGCGcGGGGAGGAGAg -3'
miRNA:   3'- -UGGCCuucaCCC--CCGC-UCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137365 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137337 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137309 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137281 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137253 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137225 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137197 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137169 0.68 0.604681
Target:  5'- aGCgaGGGAG-GaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- -UGg-CCUUCaC-CCcCGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 137133 0.69 0.564758
Target:  5'- -gUGGAAGgagcgagggaGGaGGaGCGAGGGAGGAGGa -3'
miRNA:   3'- ugGCCUUCa---------CC-CC-CGCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 136392 0.67 0.71463
Target:  5'- uGCCGGGAcUGGGGGCGGacGuGGugucGGAGc -3'
miRNA:   3'- -UGGCCUUcACCCCCGCU--C-CCu---UCUCu -5'
23694 5' -59.3 NC_005261.1 + 136182 0.76 0.248864
Target:  5'- aGCgaGGAAaaGGGGGCGAGGaGAAGGGAg -3'
miRNA:   3'- -UGg-CCUUcaCCCCCGCUCC-CUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 129495 0.74 0.313553
Target:  5'- cACC-GAGG-GGGGGaGGGGGAAGGGAa -3'
miRNA:   3'- -UGGcCUUCaCCCCCgCUCCCUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 128060 0.66 0.724386
Target:  5'- aACCGGGccaUGGcGGGCGGGcGGgcGAGc -3'
miRNA:   3'- -UGGCCUuc-ACC-CCCGCUC-CCuuCUCu -5'
23694 5' -59.3 NC_005261.1 + 127310 0.67 0.694924
Target:  5'- gGCUGGcGGUGGGGcccugccgcccGCGGGGGccGGAGc -3'
miRNA:   3'- -UGGCCuUCACCCC-----------CGCUCCCu-UCUCu -5'
23694 5' -59.3 NC_005261.1 + 117774 0.73 0.382004
Target:  5'- uCCGGAuc--GGGGCGGGGaGGAGGGAg -3'
miRNA:   3'- uGGCCUucacCCCCGCUCC-CUUCUCU- -5'
23694 5' -59.3 NC_005261.1 + 115048 0.68 0.644916
Target:  5'- cACCcuggcGAAG-GGGGGCGGGGuGggGAu- -3'
miRNA:   3'- -UGGc----CUUCaCCCCCGCUCC-CuuCUcu -5'
23694 5' -59.3 NC_005261.1 + 110793 0.7 0.496846
Target:  5'- uCCGGggGacGGcGGGCGAGGaGgcGGGGg -3'
miRNA:   3'- uGGCCuuCa-CC-CCCGCUCC-CuuCUCU- -5'
23694 5' -59.3 NC_005261.1 + 108904 0.67 0.68499
Target:  5'- cGCCGGcGAGcGGGGcGCG-GGGucGGGGc -3'
miRNA:   3'- -UGGCC-UUCaCCCC-CGCuCCCuuCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.