Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23695 | 3' | -50.7 | NC_005261.1 | + | 11540 | 1.14 | 0.004581 |
Target: 5'- cCCCGCGUUGGGCGAAAAAAGAAGGGGg -3' miRNA: 3'- -GGGCGCAACCCGCUUUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 90126 | 0.85 | 0.298251 |
Target: 5'- gCCCGCGgcgaGGGCGA----GGAGGGGGg -3' miRNA: 3'- -GGGCGCaa--CCCGCUuuuuUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 32934 | 0.83 | 0.37587 |
Target: 5'- --gGCGggggggGGGCGggGAGGGGAGGGGa -3' miRNA: 3'- gggCGCaa----CCCGCuuUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 22764 | 0.8 | 0.505109 |
Target: 5'- cCCaCGCGUcuggGGGCGGGccccgcGAGAAGGGGg -3' miRNA: 3'- -GG-GCGCAa---CCCGCUUuu----UUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 22980 | 0.8 | 0.505109 |
Target: 5'- aCCGgGaggagGcGGCGGAGGAAGAGGGGGg -3' miRNA: 3'- gGGCgCaa---C-CCGCUUUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 32989 | 0.79 | 0.525175 |
Target: 5'- aCCGCGgaggaggGGGCcgaccgggGAAGGGGGGAGGGGg -3' miRNA: 3'- gGGCGCaa-----CCCG--------CUUUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 7988 | 0.78 | 0.60789 |
Target: 5'- gCCCGg--UGGGagaGggGGGAGAGGGGGg -3' miRNA: 3'- -GGGCgcaACCCg--CuuUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 24283 | 0.77 | 0.627856 |
Target: 5'- gCCCGgGUggGGGUGggGGGccaggaugaggguGGggGGGGg -3' miRNA: 3'- -GGGCgCAa-CCCGCuuUUU-------------UCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 78409 | 0.77 | 0.628908 |
Target: 5'- cUCCGUGcucugUGGGCGAu---GGggGGGGc -3' miRNA: 3'- -GGGCGCa----ACCCGCUuuuuUCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 33103 | 0.77 | 0.669858 |
Target: 5'- cCCUGCGUcGGGCacucgcccuccgcGAacaGAGGGGGAGGGGg -3' miRNA: 3'- -GGGCGCAaCCCG-------------CU---UUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 11785 | 0.77 | 0.670904 |
Target: 5'- aUuuGCG--GGGCgGAGGGGGGAAGGGGg -3' miRNA: 3'- -GggCGCaaCCCG-CUUUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 26866 | 0.76 | 0.702081 |
Target: 5'- --aGCGUgaaugGGGCGggGGuggguGGggGGGGg -3' miRNA: 3'- gggCGCAa----CCCGCuuUUu----UCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 84098 | 0.76 | 0.712362 |
Target: 5'- -aUGCGccacggGGGCGGGAugGGGAGGGGg -3' miRNA: 3'- ggGCGCaa----CCCGCUUUuuUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 470 | 0.75 | 0.741734 |
Target: 5'- gCCgGCGggaUGGcGCGggGaggagagGAGGGAGGGGg -3' miRNA: 3'- -GGgCGCa--ACC-CGCuuU-------UUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 138141 | 0.75 | 0.741734 |
Target: 5'- gCCgGCGggaUGGcGCGggGaggagagGAGGGAGGGGg -3' miRNA: 3'- -GGgCGCa--ACC-CGCuuU-------UUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 28007 | 0.75 | 0.741734 |
Target: 5'- cUCCGCGaaaggGGGcCGGcggggagGAGAGGGAGGGGa -3' miRNA: 3'- -GGGCGCaa---CCC-GCU-------UUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 8828 | 0.75 | 0.742733 |
Target: 5'- gCCCGcCGggcaaggGGGCGggGAcaggccguGGGAGGGGc -3' miRNA: 3'- -GGGC-GCaa-----CCCGCuuUUu-------UCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 56001 | 0.74 | 0.800451 |
Target: 5'- aCCGCGgcggGGGCGG----GGgcGGGGa -3' miRNA: 3'- gGGCGCaa--CCCGCUuuuuUCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 5288 | 0.74 | 0.818506 |
Target: 5'- gCCGCGgugcgcgcGGGUcccuggagaGGAGGAGGAGGGGGu -3' miRNA: 3'- gGGCGCaa------CCCG---------CUUUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 137710 | 0.73 | 0.852405 |
Target: 5'- cCCCGCGcgaccccgggGGGUGuuuuuuGGggGGGGg -3' miRNA: 3'- -GGGCGCaa--------CCCGCuuuuu-UCuuCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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