miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23695 3' -50.7 NC_005261.1 + 57183 0.73 0.860372
Target:  5'- --aGUGggGucGGCGGGAAGGGggGGGGg -3'
miRNA:   3'- gggCGCaaC--CCGCUUUUUUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 22553 0.73 0.860372
Target:  5'- gCCGCGgcGaGauaCGggGAGGGGAGGGGg -3'
miRNA:   3'- gGGCGCaaC-Cc--GCuuUUUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 96478 0.72 0.868121
Target:  5'- cUCCGCGgcuggGGGUGAugGGAGcaguGGGGa -3'
miRNA:   3'- -GGGCGCaa---CCCGCUuuUUUCuu--CCCC- -5'
23695 3' -50.7 NC_005261.1 + 27320 0.72 0.875647
Target:  5'- gCgCGCGggucaaggGGGCGGAAcgGGGGAAaGGGGg -3'
miRNA:   3'- -GgGCGCaa------CCCGCUUU--UUUCUU-CCCC- -5'
23695 3' -50.7 NC_005261.1 + 4822 0.72 0.875647
Target:  5'- cUCCGCGUUGGGCGc----AGgcGGcGGc -3'
miRNA:   3'- -GGGCGCAACCCGCuuuuuUCuuCC-CC- -5'
23695 3' -50.7 NC_005261.1 + 26 0.72 0.881501
Target:  5'- cCCCGCGcgaccccggggGGGUGuuuuuuGGggGGGGg -3'
miRNA:   3'- -GGGCGCaa---------CCCGCuuuuu-UCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 74906 0.72 0.882942
Target:  5'- gCCCGCGcUGGccgcGCGggGGAGGGcgaggacGGGGa -3'
miRNA:   3'- -GGGCGCaACC----CGCuuUUUUCUu------CCCC- -5'
23695 3' -50.7 NC_005261.1 + 68085 0.72 0.882942
Target:  5'- gCCCGCGg-GGGCGggGAGGccguGAAGuucGGGc -3'
miRNA:   3'- -GGGCGCaaCCCGCuuUUUU----CUUC---CCC- -5'
23695 3' -50.7 NC_005261.1 + 30827 0.72 0.896823
Target:  5'- gCCCGgGgacgGGGcCGAgGAGGAGGAGGaGGa -3'
miRNA:   3'- -GGGCgCaa--CCC-GCU-UUUUUCUUCC-CC- -5'
23695 3' -50.7 NC_005261.1 + 121785 0.72 0.896823
Target:  5'- gCCGCGgccGGCGGGcuGGGcAGGGGg -3'
miRNA:   3'- gGGCGCaacCCGCUUuuUUCuUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 132665 0.72 0.896823
Target:  5'- gCCGCGUgugGGuGCGAGGAcAAGAuGGGc -3'
miRNA:   3'- gGGCGCAa--CC-CGCUUUU-UUCUuCCCc -5'
23695 3' -50.7 NC_005261.1 + 80058 0.71 0.903401
Target:  5'- aCUgGCGgcGGGCGcgGGGGGcguGGGGGa -3'
miRNA:   3'- -GGgCGCaaCCCGCuuUUUUCu--UCCCC- -5'
23695 3' -50.7 NC_005261.1 + 25389 0.71 0.903401
Target:  5'- gCgCGCGggucGGGgGAGGAGAGGgugAGGGGc -3'
miRNA:   3'- -GgGCGCaa--CCCgCUUUUUUCU---UCCCC- -5'
23695 3' -50.7 NC_005261.1 + 78524 0.71 0.909731
Target:  5'- -gCGCGagcgGaGGCGGcGAGGGGAAGGGGa -3'
miRNA:   3'- ggGCGCaa--C-CCGCU-UUUUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 22092 0.71 0.915813
Target:  5'- gCCGCGUggGGGCG-----GGAGGGcGGu -3'
miRNA:   3'- gGGCGCAa-CCCGCuuuuuUCUUCC-CC- -5'
23695 3' -50.7 NC_005261.1 + 97675 0.71 0.915813
Target:  5'- gUCCGCGgggcUUGGGCGggGcu-GccGGGGc -3'
miRNA:   3'- -GGGCGC----AACCCGCuuUuuuCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 27020 0.71 0.921644
Target:  5'- gCUgGCGggGGGgaggaGAAGAAAGAccuGGGGGc -3'
miRNA:   3'- -GGgCGCaaCCCg----CUUUUUUCU---UCCCC- -5'
23695 3' -50.7 NC_005261.1 + 129496 0.71 0.921644
Target:  5'- aCCGag--GGGgGGAGGGGGAAGGGa -3'
miRNA:   3'- gGGCgcaaCCCgCUUUUUUCUUCCCc -5'
23695 3' -50.7 NC_005261.1 + 605 0.71 0.921644
Target:  5'- uUCGCGgaGGGCGAGugcccGAcgcAGGGGa -3'
miRNA:   3'- gGGCGCaaCCCGCUUuuuu-CU---UCCCC- -5'
23695 3' -50.7 NC_005261.1 + 13694 0.71 0.927222
Target:  5'- --gGCGUgGGGCGggGcgGGcuGGGGg -3'
miRNA:   3'- gggCGCAaCCCGCuuUuuUCuuCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.