Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23695 | 3' | -50.7 | NC_005261.1 | + | 74343 | 0.67 | 0.990359 |
Target: 5'- aCCGCaGgcGcGGCGGc---GGAAGGGGc -3' miRNA: 3'- gGGCG-CaaC-CCGCUuuuuUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 16178 | 0.67 | 0.991573 |
Target: 5'- -gCGCGggcGuGGCGggGGuGGgcGGGGg -3' miRNA: 3'- ggGCGCaa-C-CCGCuuUUuUCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 48018 | 0.67 | 0.991573 |
Target: 5'- cCCCGcCGgcagagcaGGGCGAGGAGcacgcgcgcgcGGucGGGGc -3' miRNA: 3'- -GGGC-GCaa------CCCGCUUUUU-----------UCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 120928 | 0.67 | 0.991573 |
Target: 5'- aUCCGCGagcgccGGGCGc---GGGAAGGuGGa -3' miRNA: 3'- -GGGCGCaa----CCCGCuuuuUUCUUCC-CC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 7106 | 0.67 | 0.989969 |
Target: 5'- aCUCGCGgu-GGCGcucucuuaacagccAGAGGAGAAGGaGGa -3' miRNA: 3'- -GGGCGCaacCCGC--------------UUUUUUCUUCC-CC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 27208 | 0.67 | 0.985881 |
Target: 5'- --gGCGgaGGGgGGGAAAGGGggaagggugaAGGGGg -3' miRNA: 3'- gggCGCaaCCCgCUUUUUUCU----------UCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 127331 | 0.67 | 0.987522 |
Target: 5'- gCCCGCGggGGcCGGAGc--GgcGGGGc -3' miRNA: 3'- -GGGCGCaaCCcGCUUUuuuCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 5840 | 0.67 | 0.989012 |
Target: 5'- gCCGgGUUacGGCGGccGAGAGAGGGGu -3' miRNA: 3'- gGGCgCAAc-CCGCUu-UUUUCUUCCCc -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 36913 | 0.67 | 0.989837 |
Target: 5'- cCCCGCGcUGGGCcGGGAcguacuccGGGGc -3' miRNA: 3'- -GGGCGCaACCCG-CUUUuuucuu--CCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 7054 | 0.68 | 0.982314 |
Target: 5'- cUCCGCGUccGGGCGuguggcccAGGGGc -3' miRNA: 3'- -GGGCGCAa-CCCGCuuuuuucuUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 117767 | 0.68 | 0.982109 |
Target: 5'- aCUCGgGUccggaucgGGGCGG--GGAGGAGGGa -3' miRNA: 3'- -GGGCgCAa-------CCCGCUuuUUUCUUCCCc -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 138092 | 0.68 | 0.977626 |
Target: 5'- uCCCGCGacgGGGUgcccacggaccgGGAcgGGGAcGGGGg -3' miRNA: 3'- -GGGCGCaa-CCCG------------CUUuuUUCUuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 23734 | 0.68 | 0.977626 |
Target: 5'- gCCGCGccGaGGCGcguccGGGAGGGGc -3' miRNA: 3'- gGGCGCaaC-CCGCuuuuuUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 421 | 0.68 | 0.977626 |
Target: 5'- uCCCGCGacgGGGUgcccacggaccgGGAcgGGGAcGGGGg -3' miRNA: 3'- -GGGCGCaa-CCCG------------CUUuuUUCUuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 73255 | 0.68 | 0.975097 |
Target: 5'- cUCCGCGUUGaucucGCGGAGgcaguagcgGgcGAAGGGGu -3' miRNA: 3'- -GGGCGCAACc----CGCUUU---------UuuCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 11435 | 0.68 | 0.975097 |
Target: 5'- -gCGgGggGGGCGGcgGAAGAGGGa- -3' miRNA: 3'- ggGCgCaaCCCGCUuuUUUCUUCCcc -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 30384 | 0.68 | 0.979961 |
Target: 5'- gCCGCGgcgcGGGUGGAGguGGAGGAcaugcgggccGGGGc -3' miRNA: 3'- gGGCGCaa--CCCGCUUU--UUUCUU----------CCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 25462 | 0.68 | 0.977626 |
Target: 5'- aCCCaGCcg-GGGCuuGAGuGGGAAGGGGa -3' miRNA: 3'- -GGG-CGcaaCCCGcuUUU-UUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 129548 | 0.69 | 0.969424 |
Target: 5'- gCCGCaaggugcaagacGgcGGGCGuAGAGGAGGAGGcGGc -3' miRNA: 3'- gGGCG------------CaaCCCGC-UUUUUUCUUCC-CC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 11811 | 0.69 | 0.966266 |
Target: 5'- --gGCGgaGGG-GGAAAGAGAGuGGGGg -3' miRNA: 3'- gggCGCaaCCCgCUUUUUUCUU-CCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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