miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23695 3' -50.7 NC_005261.1 + 11811 0.69 0.966266
Target:  5'- --gGCGgaGGG-GGAAAGAGAGuGGGGg -3'
miRNA:   3'- gggCGCaaCCCgCUUUUUUCUU-CCCC- -5'
23695 3' -50.7 NC_005261.1 + 12561 0.69 0.959274
Target:  5'- cCCCGCGccGGGCaacgcGggGccGAGAGGGGc -3'
miRNA:   3'- -GGGCGCaaCCCG-----CuuUu-UUCUUCCCc -5'
23695 3' -50.7 NC_005261.1 + 13086 0.66 0.994506
Target:  5'- gCCCGuCGgcGGGCGGcgGGcucGGcucGGGGGc -3'
miRNA:   3'- -GGGC-GCaaCCCGCUuuUU---UCu--UCCCC- -5'
23695 3' -50.7 NC_005261.1 + 13694 0.71 0.927222
Target:  5'- --gGCGUgGGGCGggGcgGGcuGGGGg -3'
miRNA:   3'- gggCGCAaCCCGCuuUuuUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 15026 0.66 0.992664
Target:  5'- gUCgGCGggugccggGGGCGuagc-GGggGGGGu -3'
miRNA:   3'- -GGgCGCaa------CCCGCuuuuuUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 15942 0.67 0.987522
Target:  5'- gCCCGgGcaggagccggGGGCGAGuggcGGgcGGGGg -3'
miRNA:   3'- -GGGCgCaa--------CCCGCUUuuu-UCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 16178 0.67 0.991573
Target:  5'- -gCGCGggcGuGGCGggGGuGGgcGGGGg -3'
miRNA:   3'- ggGCGCaa-C-CCGCuuUUuUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 19933 0.66 0.995955
Target:  5'- gCCCucgcuaGCGUccUGGGCGggGGu----GGGGc -3'
miRNA:   3'- -GGG------CGCA--ACCCGCuuUUuucuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 21821 0.69 0.969424
Target:  5'- gCCCGCGgcGGGCGcgcgugcGGgcGGGc -3'
miRNA:   3'- -GGGCGCaaCCCGCuuuuu--UCuuCCCc -5'
23695 3' -50.7 NC_005261.1 + 22092 0.71 0.915813
Target:  5'- gCCGCGUggGGGCG-----GGAGGGcGGu -3'
miRNA:   3'- gGGCGCAa-CCCGCuuuuuUCUUCC-CC- -5'
23695 3' -50.7 NC_005261.1 + 22127 0.67 0.985881
Target:  5'- gCgUGCGguauacGGCGggGggGGGGAAGGGGc -3'
miRNA:   3'- -GgGCGCaac---CCGCuuU--UUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 22553 0.73 0.860372
Target:  5'- gCCGCGgcGaGauaCGggGAGGGGAGGGGg -3'
miRNA:   3'- gGGCGCaaC-Cc--GCuuUUUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 22764 0.8 0.505109
Target:  5'- cCCaCGCGUcuggGGGCGGGccccgcGAGAAGGGGg -3'
miRNA:   3'- -GG-GCGCAa---CCCGCUUuu----UUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 22980 0.8 0.505109
Target:  5'- aCCGgGaggagGcGGCGGAGGAAGAGGGGGg -3'
miRNA:   3'- gGGCgCaa---C-CCGCUUUUUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 23632 0.69 0.959274
Target:  5'- gCgGCGggggucGGGCGGcuGGAAGGGAGaGGGg -3'
miRNA:   3'- gGgCGCaa----CCCGCU--UUUUUCUUC-CCC- -5'
23695 3' -50.7 NC_005261.1 + 23734 0.68 0.977626
Target:  5'- gCCGCGccGaGGCGcguccGGGAGGGGc -3'
miRNA:   3'- gGGCGCaaC-CCGCuuuuuUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 23995 0.69 0.962885
Target:  5'- gUCGCGgcGGaGCGcugcugcuAGGGGAGGGGg -3'
miRNA:   3'- gGGCGCaaCC-CGCuuu-----UUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 24283 0.77 0.627856
Target:  5'- gCCCGgGUggGGGUGggGGGccaggaugaggguGGggGGGGg -3'
miRNA:   3'- -GGGCgCAa-CCCGCuuUUU-------------UCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 25389 0.71 0.903401
Target:  5'- gCgCGCGggucGGGgGAGGAGAGGgugAGGGGc -3'
miRNA:   3'- -GgGCGCaa--CCCgCUUUUUUCU---UCCCC- -5'
23695 3' -50.7 NC_005261.1 + 25462 0.68 0.977626
Target:  5'- aCCCaGCcg-GGGCuuGAGuGGGAAGGGGa -3'
miRNA:   3'- -GGG-CGcaaCCCGcuUUU-UUCUUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.