Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23695 | 3' | -50.7 | NC_005261.1 | + | 1008 | 0.67 | 0.988136 |
Target: 5'- --gGCGggGGGCGggGGGcgggugggcuuuugcGGAGGGcGGc -3' miRNA: 3'- gggCGCaaCCCGCuuUUU---------------UCUUCC-CC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 15942 | 0.67 | 0.987522 |
Target: 5'- gCCCGgGcaggagccggGGGCGAGuggcGGgcGGGGg -3' miRNA: 3'- -GGGCgCaa--------CCCGCUUuuu-UCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 127331 | 0.67 | 0.987522 |
Target: 5'- gCCCGCGggGGcCGGAGc--GgcGGGGc -3' miRNA: 3'- -GGGCGCaaCCcGCUUUuuuCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 33796 | 0.67 | 0.987365 |
Target: 5'- cCCCGCGc-GGGCGGcgGGcuugucuuugggcGGccGGGGg -3' miRNA: 3'- -GGGCGCaaCCCGCUuuUU-------------UCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 81446 | 0.67 | 0.987206 |
Target: 5'- cCCCGCGgcGGGCGccgccagcAGcAGGGc -3' miRNA: 3'- -GGGCGCaaCCCGCuuuuu---UCuUCCCc -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 27667 | 0.67 | 0.985881 |
Target: 5'- gCCC-CuUUGGGagaaGAagaaggagAAGAAGAAGGGGg -3' miRNA: 3'- -GGGcGcAACCCg---CU--------UUUUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 27208 | 0.67 | 0.985881 |
Target: 5'- --gGCGgaGGGgGGGAAAGGGggaagggugaAGGGGg -3' miRNA: 3'- gggCGCaaCCCgCUUUUUUCU----------UCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 22127 | 0.67 | 0.985881 |
Target: 5'- gCgUGCGguauacGGCGggGggGGGGAAGGGGc -3' miRNA: 3'- -GgGCGCaac---CCGCuuU--UUUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 11465 | 0.67 | 0.985881 |
Target: 5'- --aGCGgagcGGGCGcgGAGGGgcGGGGc -3' miRNA: 3'- gggCGCaa--CCCGCuuUUUUCuuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 7054 | 0.68 | 0.982314 |
Target: 5'- cUCCGCGUccGGGCGuguggcccAGGGGc -3' miRNA: 3'- -GGGCGCAa-CCCGCuuuuuucuUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 117767 | 0.68 | 0.982109 |
Target: 5'- aCUCGgGUccggaucgGGGCGG--GGAGGAGGGa -3' miRNA: 3'- -GGGCgCAa-------CCCGCUuuUUUCUUCCCc -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 30384 | 0.68 | 0.979961 |
Target: 5'- gCCGCGgcgcGGGUGGAGguGGAGGAcaugcgggccGGGGc -3' miRNA: 3'- gGGCGCaa--CCCGCUUU--UUUCUU----------CCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 25462 | 0.68 | 0.977626 |
Target: 5'- aCCCaGCcg-GGGCuuGAGuGGGAAGGGGa -3' miRNA: 3'- -GGG-CGcaaCCCGcuUUU-UUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 138092 | 0.68 | 0.977626 |
Target: 5'- uCCCGCGacgGGGUgcccacggaccgGGAcgGGGAcGGGGg -3' miRNA: 3'- -GGGCGCaa-CCCG------------CUUuuUUCUuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 23734 | 0.68 | 0.977626 |
Target: 5'- gCCGCGccGaGGCGcguccGGGAGGGGc -3' miRNA: 3'- gGGCGCaaC-CCGCuuuuuUCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 421 | 0.68 | 0.977626 |
Target: 5'- uCCCGCGacgGGGUgcccacggaccgGGAcgGGGAcGGGGg -3' miRNA: 3'- -GGGCGCaa-CCCG------------CUUuuUUCUuCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 73255 | 0.68 | 0.975097 |
Target: 5'- cUCCGCGUUGaucucGCGGAGgcaguagcgGgcGAAGGGGu -3' miRNA: 3'- -GGGCGCAACc----CGCUUU---------UuuCUUCCCC- -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 11435 | 0.68 | 0.975097 |
Target: 5'- -gCGgGggGGGCGGcgGAAGAGGGa- -3' miRNA: 3'- ggGCgCaaCCCGCUuuUUUCUUCCcc -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 21821 | 0.69 | 0.969424 |
Target: 5'- gCCCGCGgcGGGCGcgcgugcGGgcGGGc -3' miRNA: 3'- -GGGCGCaaCCCGCuuuuu--UCuuCCCc -5' |
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23695 | 3' | -50.7 | NC_005261.1 | + | 129548 | 0.69 | 0.969424 |
Target: 5'- gCCGCaaggugcaagacGgcGGGCGuAGAGGAGGAGGcGGc -3' miRNA: 3'- gGGCG------------CaaCCCGC-UUUUUUCUUCC-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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