miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23695 3' -50.7 NC_005261.1 + 11811 0.69 0.966266
Target:  5'- --gGCGgaGGG-GGAAAGAGAGuGGGGg -3'
miRNA:   3'- gggCGCaaCCCgCUUUUUUCUU-CCCC- -5'
23695 3' -50.7 NC_005261.1 + 30786 0.69 0.965275
Target:  5'- gCCGCGgcgguggaggugcugGGGCcGGAGGAGcuGGGGg -3'
miRNA:   3'- gGGCGCaa-------------CCCGcUUUUUUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 23995 0.69 0.962885
Target:  5'- gUCGCGgcGGaGCGcugcugcuAGGGGAGGGGg -3'
miRNA:   3'- gGGCGCaaCC-CGCuuu-----UUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 110792 0.69 0.962885
Target:  5'- cUCCGgGggacggcGGGCGAG--GAGgcGGGGg -3'
miRNA:   3'- -GGGCgCaa-----CCCGCUUuuUUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 43785 0.69 0.961468
Target:  5'- gCgCGCGgaGGGCGccgcggguGAGGGGGc -3'
miRNA:   3'- -GgGCGCaaCCCGCuuuuuu--CUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 12561 0.69 0.959274
Target:  5'- cCCCGCGccGGGCaacgcGggGccGAGAGGGGc -3'
miRNA:   3'- -GGGCGCaaCCCG-----CuuUu-UUCUUCCCc -5'
23695 3' -50.7 NC_005261.1 + 23632 0.69 0.959274
Target:  5'- gCgGCGggggucGGGCGGcuGGAAGGGAGaGGGg -3'
miRNA:   3'- gGgCGCaa----CCCGCU--UUUUUCUUC-CCC- -5'
23695 3' -50.7 NC_005261.1 + 98105 0.69 0.959274
Target:  5'- -gCGCGgcGGGCGGc-GAGGcuGGGGa -3'
miRNA:   3'- ggGCGCaaCCCGCUuuUUUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 81344 0.69 0.959274
Target:  5'- gCCGuCGgcgGGGCGggGGcuuGcGGGGGg -3'
miRNA:   3'- gGGC-GCaa-CCCGCuuUUuu-CuUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 30425 0.7 0.955429
Target:  5'- aCCGC---GGGCGGaccugGAGGAGGAcGGGGa -3'
miRNA:   3'- gGGCGcaaCCCGCU-----UUUUUCUU-CCCC- -5'
23695 3' -50.7 NC_005261.1 + 25972 0.7 0.951345
Target:  5'- aCCGCagggUGGaGCGGGAAAcGAugAGGGGu -3'
miRNA:   3'- gGGCGca--ACC-CGCUUUUUuCU--UCCCC- -5'
23695 3' -50.7 NC_005261.1 + 32754 0.7 0.951345
Target:  5'- gCCCGCcgcucuacGGGCucGGAGGGAGGAGaGGGa -3'
miRNA:   3'- -GGGCGcaa-----CCCG--CUUUUUUCUUC-CCC- -5'
23695 3' -50.7 NC_005261.1 + 74416 0.7 0.951345
Target:  5'- gCCGCGggcgggaGGGcCGAGGAGAGcgcccccccggcGGGGGGu -3'
miRNA:   3'- gGGCGCaa-----CCC-GCUUUUUUC------------UUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 98341 0.7 0.947018
Target:  5'- cCCCGUGUcgacgcggGGGCGggGGuGGgcGcGGGc -3'
miRNA:   3'- -GGGCGCAa-------CCCGCuuUUuUCuuC-CCC- -5'
23695 3' -50.7 NC_005261.1 + 137114 0.7 0.947018
Target:  5'- aCCCGCGcgGcGGCGuuuuguGGAAGGAgcgAGGGa -3'
miRNA:   3'- -GGGCGCaaC-CCGCu-----UUUUUCU---UCCCc -5'
23695 3' -50.7 NC_005261.1 + 49938 0.7 0.942444
Target:  5'- gCCCGCGgagccGCGcAAAAAAGGAGGcGGc -3'
miRNA:   3'- -GGGCGCaacc-CGC-UUUUUUCUUCC-CC- -5'
23695 3' -50.7 NC_005261.1 + 69926 0.7 0.942444
Target:  5'- aCCGCaggGGGUGggGugGGAGccGGGGa -3'
miRNA:   3'- gGGCGcaaCCCGCuuUuuUCUU--CCCC- -5'
23695 3' -50.7 NC_005261.1 + 9615 0.7 0.942444
Target:  5'- gCCCGgGgUGGGCaGGcgGGGGuGGGGGc -3'
miRNA:   3'- -GGGCgCaACCCG-CUuuUUUCuUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 5648 0.7 0.937621
Target:  5'- --gGgGggGGGCGGgcaacgaggAGGGAGAGGGGGa -3'
miRNA:   3'- gggCgCaaCCCGCU---------UUUUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 87799 0.7 0.937621
Target:  5'- gCCGCGUccaUGgccGGCGggGcuGGGAcGGGGa -3'
miRNA:   3'- gGGCGCA---AC---CCGCuuUuuUCUU-CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.