miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23695 3' -50.7 NC_005261.1 + 138141 0.75 0.741734
Target:  5'- gCCgGCGggaUGGcGCGggGaggagagGAGGGAGGGGg -3'
miRNA:   3'- -GGgCGCa--ACC-CGCuuU-------UUUCUUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 138092 0.68 0.977626
Target:  5'- uCCCGCGacgGGGUgcccacggaccgGGAcgGGGAcGGGGg -3'
miRNA:   3'- -GGGCGCaa-CCCG------------CUUuuUUCUuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 137710 0.73 0.852405
Target:  5'- cCCCGCGcgaccccgggGGGUGuuuuuuGGggGGGGg -3'
miRNA:   3'- -GGGCGCaa--------CCCGCuuuuu-UCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 137114 0.7 0.947018
Target:  5'- aCCCGCGcgGcGGCGuuuuguGGAAGGAgcgAGGGa -3'
miRNA:   3'- -GGGCGCaaC-CCGCu-----UUUUUCU---UCCCc -5'
23695 3' -50.7 NC_005261.1 + 136182 0.66 0.995955
Target:  5'- --aGCGaggaaaaggGGGCGAG--GAGAAGGGa -3'
miRNA:   3'- gggCGCaa-------CCCGCUUuuUUCUUCCCc -5'
23695 3' -50.7 NC_005261.1 + 134363 0.66 0.995203
Target:  5'- gCCgCGCGggGGGCGGcgccgcuggcgacGGcGAGAGcGGGa -3'
miRNA:   3'- -GG-GCGCaaCCCGCU-------------UUuUUCUUcCCC- -5'
23695 3' -50.7 NC_005261.1 + 132665 0.72 0.896823
Target:  5'- gCCGCGUgugGGuGCGAGGAcAAGAuGGGc -3'
miRNA:   3'- gGGCGCAa--CC-CGCUUUU-UUCUuCCCc -5'
23695 3' -50.7 NC_005261.1 + 129548 0.69 0.969424
Target:  5'- gCCGCaaggugcaagacGgcGGGCGuAGAGGAGGAGGcGGc -3'
miRNA:   3'- gGGCG------------CaaCCCGC-UUUUUUCUUCC-CC- -5'
23695 3' -50.7 NC_005261.1 + 129496 0.71 0.921644
Target:  5'- aCCGag--GGGgGGAGGGGGAAGGGa -3'
miRNA:   3'- gGGCgcaaCCCgCUUUUUUCUUCCCc -5'
23695 3' -50.7 NC_005261.1 + 127331 0.67 0.987522
Target:  5'- gCCCGCGggGGcCGGAGc--GgcGGGGc -3'
miRNA:   3'- -GGGCGCaaCCcGCUUUuuuCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 121785 0.72 0.896823
Target:  5'- gCCGCGgccGGCGGGcuGGGcAGGGGg -3'
miRNA:   3'- gGGCGCaacCCGCUUuuUUCuUCCCC- -5'
23695 3' -50.7 NC_005261.1 + 120928 0.67 0.991573
Target:  5'- aUCCGCGagcgccGGGCGc---GGGAAGGuGGa -3'
miRNA:   3'- -GGGCGCaa----CCCGCuuuuUUCUUCC-CC- -5'
23695 3' -50.7 NC_005261.1 + 119704 0.66 0.995276
Target:  5'- uCCaCGCGc--GGCGAu--GAGGAGGGc -3'
miRNA:   3'- -GG-GCGCaacCCGCUuuuUUCUUCCCc -5'
23695 3' -50.7 NC_005261.1 + 119273 0.66 0.995203
Target:  5'- uCCUGCucgcUGGGCGggGgcucgccGAGGAAGcGGa -3'
miRNA:   3'- -GGGCGca--ACCCGCuuU-------UUUCUUC-CCc -5'
23695 3' -50.7 NC_005261.1 + 117767 0.68 0.982109
Target:  5'- aCUCGgGUccggaucgGGGCGG--GGAGGAGGGa -3'
miRNA:   3'- -GGGCgCAa-------CCCGCUuuUUUCUUCCCc -5'
23695 3' -50.7 NC_005261.1 + 110792 0.69 0.962885
Target:  5'- cUCCGgGggacggcGGGCGAG--GAGgcGGGGg -3'
miRNA:   3'- -GGGCgCaa-----CCCGCUUuuUUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 98341 0.7 0.947018
Target:  5'- cCCCGUGUcgacgcggGGGCGggGGuGGgcGcGGGc -3'
miRNA:   3'- -GGGCGCAa-------CCCGCuuUUuUCuuC-CCC- -5'
23695 3' -50.7 NC_005261.1 + 98105 0.69 0.959274
Target:  5'- -gCGCGgcGGGCGGc-GAGGcuGGGGa -3'
miRNA:   3'- ggGCGCaaCCCGCUuuUUUCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 97675 0.71 0.915813
Target:  5'- gUCCGCGgggcUUGGGCGggGcu-GccGGGGc -3'
miRNA:   3'- -GGGCGC----AACCCGCuuUuuuCuuCCCC- -5'
23695 3' -50.7 NC_005261.1 + 96478 0.72 0.868121
Target:  5'- cUCCGCGgcuggGGGUGAugGGAGcaguGGGGa -3'
miRNA:   3'- -GGGCGCaa---CCCGCUuuUUUCuu--CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.