miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 37721 0.67 0.581855
Target:  5'- cCCUCGgcccgccggagccccCCGuCGcCCCCCgCGGgcGCCg -3'
miRNA:   3'- -GGAGC---------------GGCuGCuGGGGG-GCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 69191 0.67 0.577998
Target:  5'- aCCgUCGCggacgcggccaaCGACG-UCCUCCGGGAGCUg -3'
miRNA:   3'- -GG-AGCG------------GCUGCuGGGGGGCCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 132373 0.67 0.577998
Target:  5'- gCUCGCCGcgcucGCGGCgcuguUCCCCG-AGGCCg -3'
miRNA:   3'- gGAGCGGC-----UGCUG-----GGGGGCcUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 133511 0.67 0.577998
Target:  5'- gCCUCGggaccguguucaCCGugGACCUCUCGGGGcGCg- -3'
miRNA:   3'- -GGAGC------------GGCugCUGGGGGGCCUU-CGga -5'
23698 5' -62.4 NC_005261.1 + 90046 0.67 0.577998
Target:  5'- uCCUgcUGCCGgacagccaGCGGCgCCCCgCGGgcGCCg -3'
miRNA:   3'- -GGA--GCGGC--------UGCUG-GGGG-GCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 45181 0.67 0.575109
Target:  5'- aCCgCGCCGAgugugaggccaugcCGGCCUUCCGGGGcuucGCCUu -3'
miRNA:   3'- -GGaGCGGCU--------------GCUGGGGGGCCUU----CGGA- -5'
23698 5' -62.4 NC_005261.1 + 28156 0.67 0.575109
Target:  5'- aUCUcCGCCGcucggGCG-CCCCCCGucucgcugcgcgccGAAGCCg -3'
miRNA:   3'- -GGA-GCGGC-----UGCuGGGGGGC--------------CUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 73842 0.67 0.568382
Target:  5'- uCUUgGgCGAguCGGCgCCCCGGAGGCUUu -3'
miRNA:   3'- -GGAgCgGCU--GCUGgGGGGCCUUCGGA- -5'
23698 5' -62.4 NC_005261.1 + 59139 0.67 0.568382
Target:  5'- aCUCagGCCGGCG-CgCCCCGGgcGCg- -3'
miRNA:   3'- gGAG--CGGCUGCuGgGGGGCCuuCGga -5'
23698 5' -62.4 NC_005261.1 + 78157 0.67 0.568382
Target:  5'- gCCgcuGCCGGCGGgCCaCCUGaGGAGCCc -3'
miRNA:   3'- -GGag-CGGCUGCUgGG-GGGC-CUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 88561 0.67 0.568382
Target:  5'- cCCgagCGCCGGCGACgCgUCCCGcuucgccgccGAGGCCc -3'
miRNA:   3'- -GGa--GCGGCUGCUG-G-GGGGC----------CUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 76736 0.67 0.568382
Target:  5'- gCUgGCCGACGugCUCgCGGAcguGGCg- -3'
miRNA:   3'- gGAgCGGCUGCugGGGgGCCU---UCGga -5'
23698 5' -62.4 NC_005261.1 + 5134 0.67 0.567423
Target:  5'- gCC-CGCCGGCGcucgcgcGCCUcggCCCGGcGGGCCg -3'
miRNA:   3'- -GGaGCGGCUGC-------UGGG---GGGCC-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 57340 0.67 0.558807
Target:  5'- gCCggCGCCGuucaccggcACGACCuCCCCGcGcGGCCc -3'
miRNA:   3'- -GGa-GCGGC---------UGCUGG-GGGGC-CuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 107125 0.67 0.558807
Target:  5'- aCCgCGCCGGCGACggcgCCCaCGGccgcGGCCa -3'
miRNA:   3'- -GGaGCGGCUGCUGg---GGG-GCCu---UCGGa -5'
23698 5' -62.4 NC_005261.1 + 31035 0.67 0.558807
Target:  5'- gCCggcgCGCCGcCGGgUCCCCagcgcggcGGGAGCCg -3'
miRNA:   3'- -GGa---GCGGCuGCUgGGGGG--------CCUUCGGa -5'
23698 5' -62.4 NC_005261.1 + 53583 0.67 0.557851
Target:  5'- gCCgcggGCCGGCGGCgCCCCagCGGAccgacgaGGCCg -3'
miRNA:   3'- -GGag--CGGCUGCUG-GGGG--GCCU-------UCGGa -5'
23698 5' -62.4 NC_005261.1 + 77022 0.67 0.555943
Target:  5'- uCCUCGCCGACGccgaggccgcgcgcGCggCCCUCGGcgaccgcGCCUg -3'
miRNA:   3'- -GGAGCGGCUGC--------------UG--GGGGGCCuu-----CGGA- -5'
23698 5' -62.4 NC_005261.1 + 29127 0.67 0.553083
Target:  5'- cCCUggCGCCGGgGggcGCCCCgCCGGAcccgcccgcggauccAGCCa -3'
miRNA:   3'- -GGA--GCGGCUgC---UGGGG-GGCCU---------------UCGGa -5'
23698 5' -62.4 NC_005261.1 + 24344 0.67 0.549277
Target:  5'- aCCUCGCaauGCGGCUCCCgGGGAucGUCg -3'
miRNA:   3'- -GGAGCGgc-UGCUGGGGGgCCUU--CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.