miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23698 5' -62.4 NC_005261.1 + 46253 0.66 0.62551
Target:  5'- gCCgCGgCGGCGGCCgcgaccguguCCCCGGGgcgcucuGGCCg -3'
miRNA:   3'- -GGaGCgGCUGCUGG----------GGGGCCU-------UCGGa -5'
23698 5' -62.4 NC_005261.1 + 116720 0.66 0.616753
Target:  5'- gCUgGCCGACGucGCCgCCCUGcuGAGCCc -3'
miRNA:   3'- gGAgCGGCUGC--UGG-GGGGCc-UUCGGa -5'
23698 5' -62.4 NC_005261.1 + 106770 0.66 0.616753
Target:  5'- gCUUGCCGGCGGCCagCCCaGc-GCCg -3'
miRNA:   3'- gGAGCGGCUGCUGGg-GGGcCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 94034 0.66 0.607032
Target:  5'- uUCUCGgcggcCCGGCGcGCCCCCCcagcggcgccGGGAGCa- -3'
miRNA:   3'- -GGAGC-----GGCUGC-UGGGGGG----------CCUUCGga -5'
23698 5' -62.4 NC_005261.1 + 89770 0.66 0.607032
Target:  5'- gCCgUgGCCGAggaGGCCCUgCGGGAGCg- -3'
miRNA:   3'- -GG-AgCGGCUg--CUGGGGgGCCUUCGga -5'
23698 5' -62.4 NC_005261.1 + 109881 0.66 0.607032
Target:  5'- gCC-CGCgGGCGGgCgCCCCGGGgcuacAGCCc -3'
miRNA:   3'- -GGaGCGgCUGCUgG-GGGGCCU-----UCGGa -5'
23698 5' -62.4 NC_005261.1 + 102573 0.66 0.607032
Target:  5'- gCCUCGCCGuccgcgucgGCGGCCUcgCCCGc--GCCUu -3'
miRNA:   3'- -GGAGCGGC---------UGCUGGG--GGGCcuuCGGA- -5'
23698 5' -62.4 NC_005261.1 + 42639 0.66 0.607032
Target:  5'- aCUCgGCCGccGCGGCCgCgCGGAaccAGCCa -3'
miRNA:   3'- gGAG-CGGC--UGCUGGgGgGCCU---UCGGa -5'
23698 5' -62.4 NC_005261.1 + 77709 0.66 0.607032
Target:  5'- cCCUCGaCCGcCG-CCCCCC---AGCCa -3'
miRNA:   3'- -GGAGC-GGCuGCuGGGGGGccuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 130709 0.66 0.607032
Target:  5'- aCCUCGCCGAgGACgucaCCUUCGcGcuGCCg -3'
miRNA:   3'- -GGAGCGGCUgCUG----GGGGGC-CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 97794 0.66 0.607032
Target:  5'- cCCggGCCGGCGACCgUCCGccGgcGCCc -3'
miRNA:   3'- -GGagCGGCUGCUGGgGGGC--CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 58922 0.67 0.597329
Target:  5'- aCCagcgCGCCcGCGcacGCCgCCCGGAAGCgCUc -3'
miRNA:   3'- -GGa---GCGGcUGC---UGGgGGGCCUUCG-GA- -5'
23698 5' -62.4 NC_005261.1 + 47669 0.67 0.597329
Target:  5'- gCCgcagCGCCGAgcgcagcaCGGCCgCCCGcGgcGCCg -3'
miRNA:   3'- -GGa---GCGGCU--------GCUGGgGGGC-CuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 68826 0.67 0.597329
Target:  5'- gCCUgGgCCGugGCGGCCCCCCcgucccgcggGGAcGCCc -3'
miRNA:   3'- -GGAgC-GGC--UGCUGGGGGG----------CCUuCGGa -5'
23698 5' -62.4 NC_005261.1 + 77378 0.67 0.597329
Target:  5'- gCgUCuCCGGCGcACCCCCUGccGGCCg -3'
miRNA:   3'- -GgAGcGGCUGC-UGGGGGGCcuUCGGa -5'
23698 5' -62.4 NC_005261.1 + 107648 0.67 0.594422
Target:  5'- cCCgCGCUGcgcgcgcaaacuccGCGGCCCCgCCGGGcguuGCCg -3'
miRNA:   3'- -GGaGCGGC--------------UGCUGGGG-GGCCUu---CGGa -5'
23698 5' -62.4 NC_005261.1 + 137801 0.67 0.587649
Target:  5'- cCCgCGCCGGCGcCgCCCCUGGu-GCUc -3'
miRNA:   3'- -GGaGCGGCUGCuG-GGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 83845 0.67 0.587649
Target:  5'- gCggGCCG-CGGCCCCgCUGGGcugGGCCg -3'
miRNA:   3'- gGagCGGCuGCUGGGG-GGCCU---UCGGa -5'
23698 5' -62.4 NC_005261.1 + 118 0.67 0.587649
Target:  5'- cCCgCGCCGGCGcCgCCCCUGGu-GCUc -3'
miRNA:   3'- -GGaGCGGCUGCuG-GGGGGCCuuCGGa -5'
23698 5' -62.4 NC_005261.1 + 101524 0.67 0.587649
Target:  5'- cCCUCGUCGcggucGCGcGCCgCCUCGGccGCCa -3'
miRNA:   3'- -GGAGCGGC-----UGC-UGG-GGGGCCuuCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.